Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60040 1465 / 0 NRPC1 nuclear RNA polymerase C1 (.1.2) AT4G35800 578 / 4e-179 RNA_POL_II_LSRNA_POL_II_LS, RNA_POL_II_LS, NRPB1 RNA polymerase II large subunit (.1) AT3G57660 202 / 2e-52 NRPA1 nuclear RNA polymerase A1 (.1) AT1G63020 148 / 1e-35 SMD2, PolIVa, SDE4, NRPD1a SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) AT2G40030 108 / 2e-23 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) ATCG00180 107 / 3e-23 ATCG00180.1, RPOC1 DNA-directed RNA polymerase family protein (.1) ATCG00170 50 / 1e-05 ATCG00170.1, RPOC2 DNA-directed RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015971 [exp] 1289 / 0 AT5G60040 1745 / 0.0 nuclear RNA polymerase C1 (.1.2) Lus10041856 [exp] 473 / 3e-141 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1) Lus10028403 [exp] 289 / 7e-80 AT4G35800 1076 / 0.0 RNA polymerase II large subunit (.1) Lus10000051 [exp] 246 / 2e-75 AT5G60040 224 / 5e-69 nuclear RNA polymerase C1 (.1.2) Lus10040493 [exp] 189 / 4e-48 AT3G57660 1802 / 0.0 nuclear RNA polymerase A1 (.1) Lus10011299 [exp] 187 / 1e-47 AT3G57660 1801 / 0.0 nuclear RNA polymerase A1 (.1) Lus10002748 [exp] 135 / 2e-31 AT2G40030 1773 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Lus10002955 [exp] 134 / 2e-31 AT1G63020 1326 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Lus10006339 [exp] 134 / 3e-31 AT1G63020 1343 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341900 [exp] 961 / 0 AT5G60040 1858 / 0.0 nuclear RNA polymerase C1 (.1.2) Potri.005G107600 [exp] 499 / 1e-150 AT4G35800 2836 / 0.0 RNA polymerase II large subunit (.1) Potri.006G055300 [exp] 193 / 2e-49 AT3G57660 1890 / 0.0 nuclear RNA polymerase A1 (.1) Potri.001G027232 [exp] 152 / 7e-37 AT2G40030 1596 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.003G196900 [exp] 150 / 4e-36 AT2G40030 1843 / 0.0 DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1) Potri.001G111300 [exp] 136 / 5e-32 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.019G028000 [exp] 99 / 6e-22 ATCG00180 516 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.013G140850 [exp] 99 / 1e-20 ATCG00180 1181 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.013G140260 [exp] 50 / 1e-05 ATCG00170 2104 / 0.0 DNA-directed RNA polymerase family protein (.1) Potri.019G028101 [exp] 48 / 3e-05 ATCG00170 516 / 5e-174 DNA-directed RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05000 [flax] [poplar] RNA_pol_Rpb1_4 RNA polymerase Rpb1, domain 4 PF04983 [flax] [poplar] RNA_pol_Rpb1_3 RNA polymerase Rpb1, domain 3 PF04997 [flax] [poplar] RNA_pol_Rpb1_1 RNA polymerase Rpb1, domain 1 PF04998 [flax] [poplar] RNA_pol_Rpb1_5 RNA polymerase Rpb1, domain 5 PF00623 [flax] [poplar] RNA_pol_Rpb1_2 RNA polymerase Rpb1, domain 2
Representative CDS sequence Show only first row Show all	>Lus10013536 pacid=23168719 polypeptide=Lus10013536 locus=Lus10013536.g ID=Lus10013536.BGIv1.0 annot-version=v1.0 ATGCACAACCCCTATCAGAAATCTCAAGACATAGCCTATACTAAGCAGCCTTACGTCGAAGATGCTGGTCCGCGAAGAATTGTCTCGTGTGCAGCAAAAG CAATGGAATTCTCCATTATGTCACAAGCTGATGTTCTGAAGGCGGCTGAATGTCAAGTGTATCTTGGCCAGTACTATGATACCAGCGTAAAGCCAGTCCC AGGTGGCTTGCTGGATCCCCGAATGGGTCCTGCCAAGAAAAAAGACATGCCTTGTGAAACCTGTGGCGGTAGCTTCAACGACTGCCCTGGCCACTTTGGA TATGTGTCACTTGCGCTGCCAGTTTTCAATATTGGATACCTGAGTTTTGTTCTGGACATTCTGAAGTGCATCTGTAAAAATTGCTCTTTTATACTTCTGG ATGAGAAGTTACGTGCCAAGTATTTAAGGCAGATGAGAAGTCCCAGGGTAGATCATTTGAAGAAGACCGCTATGATGAAGGCTGTTGTCAAGAAATGCAG TACCATGGCAAGCGGGAAAGATATAAAATGCATCAAATGCCATTACTTGAATGGAATGGTGAAAAAGGATAAGGGTTATTTGGTTCACGACCGTTCAAAG TCAGGTTCAAAGTCAGGTTCAACGTCAGGCGATTGCTTTACTGACGAGTGTAGATCTGCCATTTCAAACACCAAGGAGTCGAGGCCAACGATTAATCGAG CCACTTACTACCTTAACCCTTTTGAAGTGTTGTATCTCTTTCAAAGAATTTCAGATGAGGATTGTGAATTGCTTTATCTAGGTGATAGACCTGAAAAGCT AATCATCGCCAAGATTGCTGTGCCACCTATTGCTATTCGGCCGTCAGTTATTGTGGATGGGACACAAAGCAATGAAAATGACATTACAGTGAGGATGAAA GATATCATTGTAGCCAGCGCTAATCTTCTAAACGAGCTTCGAGAGGGGAAAATTGCGAAAGACAAACATCTGGACAAGTGGGATCACCTTCAAGCTTTGG TTTCACTCTATCTAAATAGTGACGCTCGAGTTCCGATAACTCGTGAATTGATGGAGCAACAGAAACAGAGGGCTAACACCTTAAGTGGTCTTACTCAGCG CCTTAAAGGAAAACAGGGGAGGTTTCGTGGCAATCTGTCAGGGAAGCGTGTTGAATTCACTGGCCGAACTGTTATATCTCCAGACCCTAATCTAAAGATT ACTGAGGTAGCAATTCCAATACATATGGCTCGCATTTTAACTTATCCTGAGTGTGTTAACCCTCGCAATATCGAGAAGTTGAAGCAGTGTGTCAGTAATG GCCCACTGAAATACCCTGGTGCAAGGATGGTTAGATATCCAGATGGTTCTCAAAAGACGTTGCAAGGAAATTTCAGAAAACGCGTTGCTGAAGAGCTGAA ATTTGGCTGTATAGTAGATCGTCATTTGGAGGATGGTGATGTCGTTCTTTTTAACCGACAACCAAGCTTGCATAGGATGTCTATCATGTCCCATAGGGCC AGAATTATGCCCTGGAGGACATTGAGATTTAACGAATCTGTTTGTAACCCATATAATGCTGATTTTGATGGTGATGAGATGAATATGCATGTCCCGCAAA CAGAAGAGGCTCGTACTGAGGCTCTCACACTGATGGGGGTGCAAAACAATTTGTGCACACCAAAAAATGGAGAGATTTTGGTTGCTTCTACACAAGATTT TTTGACGACTTCATTTCTCATTACAAGGAAGGATACCTTCTATGACCGTGCAGCATTCTCACTTATGGCAACGTATATGGGGGATGGAATGGATTCAGTG GATCTCCCCACACCTGCAATTTTGAAGGTCAGACAAGGAGAACTTCTTGTTTCTCATCGGAATGGGAACAAGGATGGACTTTACTCTGTTCTTCTCCGAG ATTACAGTTCTTTTGGCGCTGCTGTTTGCATGAATCGACTAGCAAAGTTAAGTGCACGATGGATTGGAAATCATGGCTTCTCCATTGGAATTGATGATGT TCAACCAGGAAAACAATTGAGTGACGAGAAGGGAAGAACAATCTCAAATGGTTATCAACATTGCAACAAAGTAATAGAGCAATACAATGCTGGAAAGCTT GCACTCAAACCTGGTTGTGATGCAACCCAAACTTTGGAGGCTGAAGTGTGCATGAAAGAATTGCACTGGCGAAACAGTCCATTGATCATGTCGCAGTGCA GATCTAAAGGTTCTCCTATCAATATCAGTCAGATGATTGCATGTGTTGGTCAACAGTCAGTTGGTGGCCGCCACGCTCCAGATGGATTCATGAATAGAAG TCTTCCCCATTTTCCTAGGATGTCCAAAACCCCTGCTGCTAAAGGATTTGTCGCTAATTCTTTCTACAGCGGATTGTCTGCAACTGAGTTTTTCTTCCAT ACGATGGCTGGGAGAGAAGGTCTAGTGGATACGGCAGTGAAAACTGCTGATACAGGATACATGTCTCGAAGGCTGATGAAAGGCTTAGAAGATTTATCTG TTCAATACGACAATACTGTCAGAAGTGCAAATGGGGGTATAGTTCAATTTATCTATGGGGATGATGGTTTAGATCCTGCTAAAATGGAAGCAAAAGGTGG ATTTCCATTGAATTTTGAACGATTGCTCATGAAAGTAAAGGCTACATGTTCCGTTGAAGAAGACGAGTATTTATCTCCTTCAGACATGTCGAAGGCCATT GAAGACTTGATGCTGCAAGATCGGACTCTTGACAATCCTTGTGCCAAGGCGTTCAGAAAGAGTCTCAGAAATTTCCTTGCCAAGCATGTTGTGACATTAG AAAGCATGCTAAACAAGGTGAATCACCATGAGGAAGGAAAAACTGATGGTATGGACGCCGAGTTTGCACAAGGAGATTGTAGTACTAGTTGCAAAGTCAT CTACAAAATATACGGTCTTACCAAACAGCAGTTGAAGGTCTTCCTGAGAACCTGCACAGATCGTTACCTTTGGAAGAAGGTGGAACCAGGAACTGCAATT GGAGCAATTGGAGCTCAGAGTATCGGAGAACCTGGGACGCAGATGACGCTGAAAACTTTTCACTTTGCTGGAGTTGCTAGCATGAATATTACTCAGGGAG TTCCTCGTATTAAAGAAATCATAAATGCAGCTAAAAAGATCAGTACACCAATCATAACTGCTGAGCTTGAGAACGCTACCAATGTGAAAGCCGCTCGAAT TGTGAAAGGACATACTCAGAGAACCCTACTAGGCCAGGTTGCGAAGAGCATCCAAATCGTGATGACTTCAAGATCAGCTTCGGTAGTGGTTACTCTTGAC ATGGAAATAATTCAAGAGGCACAACTCGCTGTGGATATTAACGTTGTATATGAGGCAATTGTTGGGATTCCAAGATCTAAAGTGAAGTCACAGCATGTAA AGGTTCTAGATGACAGAAAGTTGGAGGTAACCCCGCCGGGCGACAGAGATAAACTTCAGTTTGAACTTCACAACATCAAAAATATGCTCCCAAATGTTGT AGTGAAGGGTATTCATACAGTGGAACGGGCAATTATTGCTCAGAAAAAGAATGATGGCAGTGTCAAAGATGGAGGCCCCCCAAGATACAATATGCTGATA GAAGGCTCTTTGAACGATTTTCCAAGCGATGTAGGAGAGGTGCTTGGAATAACAAGGTTCGGTATCCAGAAGATGGACAAAAGCGTGCTGATGTTGGCCT CGTTCGAGAAAACCACTGATCACCTGTACAGTGCTTGCGTAAATCGGAGGGAAGACAAGATTGAGGGCGTCAGCGAGTGCGTCATAATGGGGATCCCTGT CCCGCTGGGAACTGGGATGCTCAAAATCCTCCAGAAGGTCGATAAACCGCCAGCCATGTTGCAATATGGACCTGATCCCATTGTGGGTACTAGCAGCAGC AGCAGCAGTAAGCAGACAGACTAG
AA sequence Show only first row Show all	>Lus10013536 pacid=23168719 polypeptide=Lus10013536 locus=Lus10013536.g ID=Lus10013536.BGIv1.0 annot-version=v1.0 MHNPYQKSQDIAYTKQPYVEDAGPRRIVSCAAKAMEFSIMSQADVLKAAECQVYLGQYYDTSVKPVPGGLLDPRMGPAKKKDMPCETCGGSFNDCPGHFG YVSLALPVFNIGYLSFVLDILKCICKNCSFILLDEKLRAKYLRQMRSPRVDHLKKTAMMKAVVKKCSTMASGKDIKCIKCHYLNGMVKKDKGYLVHDRSK SGSKSGSTSGDCFTDECRSAISNTKESRPTINRATYYLNPFEVLYLFQRISDEDCELLYLGDRPEKLIIAKIAVPPIAIRPSVIVDGTQSNENDITVRMK DIIVASANLLNELREGKIAKDKHLDKWDHLQALVSLYLNSDARVPITRELMEQQKQRANTLSGLTQRLKGKQGRFRGNLSGKRVEFTGRTVISPDPNLKI TEVAIPIHMARILTYPECVNPRNIEKLKQCVSNGPLKYPGARMVRYPDGSQKTLQGNFRKRVAEELKFGCIVDRHLEDGDVVLFNRQPSLHRMSIMSHRA RIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEILVASTQDFLTTSFLITRKDTFYDRAAFSLMATYMGDGMDSV DLPTPAILKVRQGELLVSHRNGNKDGLYSVLLRDYSSFGAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGKQLSDEKGRTISNGYQHCNKVIEQYNAGKL ALKPGCDATQTLEAEVCMKELHWRNSPLIMSQCRSKGSPINISQMIACVGQQSVGGRHAPDGFMNRSLPHFPRMSKTPAAKGFVANSFYSGLSATEFFFH TMAGREGLVDTAVKTADTGYMSRRLMKGLEDLSVQYDNTVRSANGGIVQFIYGDDGLDPAKMEAKGGFPLNFERLLMKVKATCSVEEDEYLSPSDMSKAI EDLMLQDRTLDNPCAKAFRKSLRNFLAKHVVTLESMLNKVNHHEEGKTDGMDAEFAQGDCSTSCKVIYKIYGLTKQQLKVFLRTCTDRYLWKKVEPGTAI GAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIINAAKKISTPIITAELENATNVKAARIVKGHTQRTLLGQVAKSIQIVMTSRSASVVVTLD MEIIQEAQLAVDINVVYEAIVGIPRSKVKSQHVKVLDDRKLEVTPPGDRDKLQFELHNIKNMLPNVVVKGIHTVERAIIAQKKNDGSVKDGGPPRYNMLI EGSLNDFPSDVGEVLGITRFGIQKMDKSVLMLASFEKTTDHLYSACVNRREDKIEGVSECVIMGIPVPLGTGMLKILQKVDKPPAMLQYGPDPIVGTSSS SSSKQTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60040		NRPC1	nuclear RNA polymerase C1 (.1....		Lus10013536 [exp]	0	1
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10017504 [exp]	1.4	0.8185
AT1G04010		ATPSAT1	phospholipid sterol acyl trans...		Lus10008234 [exp]	4.0	0.7649
AT4G31770		ATDBR1	ARABIDOPSIS THALIANA DEBRANCHI...		Lus10020096 [exp]	9.4	0.7509
AT2G32000			DNA topoisomerase, type IA, co...		Lus10035035 [exp]	11.7	0.7532
AT3G04160			unknown protein		Lus10042519 [exp]	16.1	0.7180
AT1G19110			inter-alpha-trypsin inhibitor ...		Lus10039919 [exp]	16.8	0.6618
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	19.0	0.6940
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Lus10007866 [exp]	21.1	0.6692
AT1G12930			ARM repeat superfamily protein...		Lus10012590 [exp]	23.2	0.7221
AT5G14850			Alg9-like mannosyltransferase ...		Lus10033296 [exp]	24.5	0.7474

Compare expression of checked genes

Lus10013536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.