Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07890 381 / 2e-135 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT3G09640 357 / 5e-126 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT4G35000 283 / 5e-96 APX3 ascorbate peroxidase 3 (.1) AT4G35970 248 / 1e-82 APX5 ascorbate peroxidase 5 (.1) AT1G77490 185 / 5e-56 TAPX thylakoidal ascorbate peroxidase (.1) AT4G08390 171 / 3e-51 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT4G32320 103 / 7e-26 APX6 ascorbate peroxidase 6 (.1) AT4G09010 70 / 1e-13 TL29, APX4 thylakoid lumen 29, ascorbate peroxidase 4 (.1) AT5G14130 58 / 1e-09 Peroxidase superfamily protein (.1) AT5G42180 58 / 1e-09 PER64 peroxidase 64, Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015970 [exp] 437 / 1e-156 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10019906 [exp] 343 / 2e-120 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10014128 [exp] 283 / 3e-96 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 279 / 7e-94 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10000180 [exp] 245 / 5e-81 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10028432 [exp] 218 / 2e-70 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 175 / 4e-52 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10018155 [exp] 160 / 1e-46 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10002916 [exp] 107 / 2e-27 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015400 [exp] 397 / 1e-141 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.016G084800 [exp] 380 / 7e-135 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.006G132200 [exp] 374 / 1e-132 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G112200 [exp] 275 / 4e-93 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.004G174500 [exp] 273 / 2e-92 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 272 / 6e-92 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.006G089000 [exp] 184 / 2e-59 AT3G09640 171 / 7e-55 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.005G179200 [exp] 175 / 2e-52 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 174 / 4e-52 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.006G254500 [exp] 99 / 4e-24 AT4G32320 392 / 5e-137 ascorbate peroxidase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10013537 pacid=23168717 polypeptide=Lus10013537 locus=Lus10013537.g ID=Lus10013537.BGIv1.0 annot-version=v1.0 ATGGCGAAGAACTATCCTACCGTCAGCGAGGACTACAAGAAGTCCATCGACAAGGCTAAGAGGAAGCTTAGAGGCTTCATCGCTGAGAAGAACTGTGCTC CTCTCATGCTCCGTCTCGCATGGCACTCTGCTGGGACCTTCGATACGAAGACCAAAACTGGTGGTCCTTTCGGTACCATGAGGTACTCGGCCGAGCTGGC CCATGGAGCTAACAATGGACTCGATATTGCCGTGCGACTCCTTGAGCCTATCAAGGAGCAGTTCCCTAACATCTCCTACGCTGATTTCTATCAGCTCGCC GGTGTTGTCGCTGTTGAGATCACTGGTGGACCTGATGTTCCTTTCCACCCTGGTAGAGAGGACAAGCCAGCCCCACCTCCGGAAGGTCGTCTTCCCGATG CAACCAAGGGTGTGGACCACTTGAGAGACGTGTTCGGAACCGGCATGGGGCTTAGCGACCAGGATATTGTTGCTCTCTCTGGTGGTCACACTTTGGGGAG GTGCCACAAAGAGAGGTCTGGCTTTGAAGGCCCCTGGACTACAAACCCTCTTATCTTTGACAACACCTACTTTACTGAGCTCCTGACTGGAGAGAAGGAA GGTCTTCTACAGCTACCGAGTGACAAGGCTCTTCTGAATGATCCCGTCTTCCGTCCCCTTGTTGACAAATATGCTGCGGACGAGGATGCTTTCTTTGCTG ACTATGCCGAAGCTCATAGGAAGCTGTCCGAGCTCGGATTTGCTGATGCTTAG
AA sequence Show only first row Show all	>Lus10013537 pacid=23168717 polypeptide=Lus10013537 locus=Lus10013537.g ID=Lus10013537.BGIv1.0 annot-version=v1.0 MAKNYPTVSEDYKKSIDKAKRKLRGFIAEKNCAPLMLRLAWHSAGTFDTKTKTGGPFGTMRYSAELAHGANNGLDIAVRLLEPIKEQFPNISYADFYQLA GVVAVEITGGPDVPFHPGREDKPAPPPEGRLPDATKGVDHLRDVFGTGMGLSDQDIVALSGGHTLGRCHKERSGFEGPWTTNPLIFDNTYFTELLTGEKE GLLQLPSDKALLNDPVFRPLVDKYAADEDAFFADYAEAHRKLSELGFADA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07890		ATAPX01, CS1, A...	maternal effect embryo arrest ...		Lus10013537 [exp]	0	1
AT2G25670			unknown protein		Lus10017738 [exp]	1.0	0.9653
AT3G43520			Transmembrane proteins 14C (.1...		Lus10027640 [exp]	1.7	0.9492
AT3G57560		NAGK	N-acetyl-l-glutamate kinase (....		Lus10030601 [exp]	2.0	0.9488
AT5G41670			6-phosphogluconate dehydrogena...		Lus10024725 [exp]	2.4	0.9548
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10034144 [exp]	4.2	0.9324
AT4G40042			Microsomal signal peptidase 12...		Lus10015793 [exp]	5.3	0.9238
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Lus10008470 [exp]	5.3	0.9344
AT2G37060	CCAAT	NF-YB8	"nuclear factor Y, subunit B8"...		Lus10015058 [exp]	5.4	0.9090
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	5.5	0.9308
AT5G37370		ATSRL1	PRP38 family protein (.1.2.3.4...		Lus10015203 [exp]	5.7	0.9327

Compare expression of checked genes

Lus10013537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.