Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15670 186 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G44130 180 / 1e-53 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G80440 177 / 6e-53 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G59940 158 / 4e-45 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G55270 86 / 1e-18 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G24540 78 / 5e-16 AFR ATTENUATED FAR-RED RESPONSE, Galactose oxidase/kelch repeat superfamily protein (.1) AT2G02870 74 / 1e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G63220 72 / 3e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G67480 72 / 4e-14 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G26930 72 / 4e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017300 [exp] 476 / 7e-171 AT1G15670 203 / 9e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10029329 [exp] 354 / 4e-122 AT1G15670 195 / 3e-59 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10016214 [exp] 343 / 1e-117 AT2G44130 206 / 7e-63 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10000704 [exp] 94 / 6e-21 AT4G03030 391 / 4e-131 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10042824 [exp] 87 / 8e-19 AT1G30090 578 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10028121 [exp] 86 / 9e-19 AT1G30090 583 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10022061 [exp] 84 / 3e-18 AT3G63220 476 / 7e-170 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10001071 [exp] 80 / 1e-16 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 80 / 2e-16 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G196900 [exp] 349 / 2e-120 AT1G15670 211 / 7e-66 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G007000 [exp] 314 / 2e-106 AT1G15670 198 / 1e-60 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G218400 [exp] 303 / 3e-102 AT2G44130 185 / 4e-55 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.007G147000 [exp] 179 / 7e-53 AT3G59940 300 / 4e-98 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178300 [exp] 170 / 3e-50 AT1G80440 362 / 2e-124 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G178500 [exp] 168 / 2e-49 AT1G15670 310 / 5e-104 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G000700 [exp] 167 / 3e-48 AT3G59940 283 / 2e-91 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G211700 [exp] 86 / 5e-19 AT3G63220 510 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G050600 [exp] 84 / 2e-18 AT3G63220 535 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.003G217700 [exp] 85 / 3e-18 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01344 [flax] [poplar] Kelch_1 Kelch motif CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10013538 pacid=23168749 polypeptide=Lus10013538 locus=Lus10013538.g ID=Lus10013538.BGIv1.0 annot-version=v1.0 ATGGCGCAATCAGAGTTCTCCGAGCTGATTCCGGGCTTGCCGGAGGAGATAGCGATGGAGTGTCTAATCCGACTGCACTTCTCTGCTCACGGCGTTGCTT CTGGTGTCTGCCGCCGGTGGCGTAACTTAGTCACTAGCAAGGAATTCTACTACCACAGGAAGCAGACTGGACATACTCGCAAGGCGGCGTGTCTAATTCA GGCGCTCACGTTGCCGGAACCGGAGTTCACCACGGGGAACAAACCGGTTGGACCGCCGAGGTATGGAGTTTCTCTGTTTGACCCTGTCAGCGGGTCGTGG GAGCAGGTCGAGCCGGTGCCCGATTACCCGACCGGGCTGCCACTGTTCTGCCAGGTGACCAGCACCGAAGGGAAGCTGGTGGTGATGGGCGGGTGGGACC CGGCGGATTACCACCCGGTGAGCCACGTGTTCGTGTACGAGTTCACGACTCGGAAGTGGAGGAAGGGGAAGAACATGCCGGAGGCACGCTCGTTCTTCGC CGCCGCGGGTTGGAACGGGAAGGTTCTAGTCGCTGGCGGTCATGGCGAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACGCGCTG AAGACCGCTTGGGCGTACGACGTGGACTCCGACAACTGGATCGGGTTGCCTGCGATGAGCCAGGTGCGAGACGAGTGCGAAGGTGTTGTAATTGGGTCAG AGTTCTGGGTCGTCGGCGGGTACCGCACCGAGAGCCAGGGTGAATTCGAGGGCAGCGCGGAGGCTATCGAGCTCTCAGCGTTGGAAGAAGAAAGCGGCGG CGCGTTGAGATGGAGGCGCGTGGAGAAAGCGTGGGAGGCCGGGGAGTGTCCTAGGGCTTTCCTAGGAGGGATGATCCCCAAGGCCGGGAGTTGTAAGCGT ACTTTCCCGTCTACTGTAAGATAA
AA sequence Show only first row Show all	>Lus10013538 pacid=23168749 polypeptide=Lus10013538 locus=Lus10013538.g ID=Lus10013538.BGIv1.0 annot-version=v1.0 MAQSEFSELIPGLPEEIAMECLIRLHFSAHGVASGVCRRWRNLVTSKEFYYHRKQTGHTRKAACLIQALTLPEPEFTTGNKPVGPPRYGVSLFDPVSGSW EQVEPVPDYPTGLPLFCQVTSTEGKLVVMGGWDPADYHPVSHVFVYEFTTRKWRKGKNMPEARSFFAAAGWNGKVLVAGGHGEXXXXXXXXXXXXXXNAL KTAWAYDVDSDNWIGLPAMSQVRDECEGVVIGSEFWVVGGYRTESQGEFEGSAEAIELSALEEESGGALRWRRVEKAWEAGECPRAFLGGMIPKAGSCKR TFPSTVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15670			Galactose oxidase/kelch repeat...		Lus10013538 [exp]	0	1
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10013558 [exp]	2.2	0.8490
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10021511 [exp]	2.6	0.8726
AT1G15670			Galactose oxidase/kelch repeat...		Lus10017300 [exp]	4.7	0.8710
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10002597 [exp]	6.5	0.8217
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10026878 [exp]	8.4	0.8348
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10041906 [exp]	9.6	0.8559
AT3G15358			unknown protein		Lus10011176 [exp]	13.5	0.8384
AT5G52190			Sugar isomerase (SIS) family p...		Lus10014993 [exp]	14.1	0.8373
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	14.4	0.8691
AT5G54540			Uncharacterised conserved prot...		Lus10003594 [exp]	16.5	0.8304

Compare expression of checked genes

Lus10013538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.