Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13570 82 / 2e-19 SCL30A, At-SCL30A SC35-like splicing factor 30A (.1) AT1G55310 77 / 1e-17 ATSCL33, SR33, At-SCL33 SC35-like splicing factor 33 (.1.2.3) AT3G55460 59 / 4e-11 SCL30, At-SCL30 SC35-like splicing factor 30 (.1) AT5G18810 57 / 1e-10 SCL28, At-SCL28 SC35-like splicing factor 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017299 [exp] 120 / 2e-35 AT1G55310 120 / 9e-35 SC35-like splicing factor 33 (.1.2.3) Lus10016215 [exp] 82 / 4e-20 AT1G55310 119 / 6e-34 SC35-like splicing factor 33 (.1.2.3) Lus10000953 [exp] 53 / 1e-08 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10002699 [exp] 52 / 1e-08 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G006400 [exp] 83 / 5e-20 AT3G13570 170 / 3e-52 SC35-like splicing factor 30A (.1) Potri.003G218600 [exp] 83 / 7e-20 AT3G13570 177 / 7e-55 SC35-like splicing factor 30A (.1) Potri.016G062500 [exp] 79 / 1e-18 AT3G13570 167 / 9e-52 SC35-like splicing factor 30A (.1) Potri.006G197000 [exp] 74 / 5e-17 AT1G55310 187 / 8e-59 SC35-like splicing factor 33 (.1.2.3) Potri.008G196700 [exp] 62 / 5e-12 AT5G18810 168 / 8e-52 SC35-like splicing factor 28 (.1) Potri.010G026100 [exp] 61 / 2e-11 AT5G18810 172 / 2e-53 SC35-like splicing factor 28 (.1) Potri.010G203200 [exp] 54 / 2e-09 AT3G55460 144 / 1e-41 SC35-like splicing factor 30 (.1) Potri.008G056600 [exp] 54 / 3e-09 AT3G55460 134 / 6e-38 SC35-like splicing factor 30 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013539 pacid=23168758 polypeptide=Lus10013539 locus=Lus10013539.g ID=Lus10013539.BGIv1.0 annot-version=v1.0 ATGAGGCGAAGAAGCTACAGTTACAGTCCTTCTCCGCCGAGAGGATATGGAAGGCCACGCCGCCGCAGTCCTAGCCCAAGGGGACGTTATGGAGGTCGTA GCAGGGATATGCCAACCAGTCTCCTAGTTCGCAACCTTCGACATGACTGCAGGCCTGAAGATCTCCGCAGACCATTCGGGCAGTTTGGTCCTTTGAAGGA CATTTATCTGCCACGCGATTATAATACAGGTAGTGAGCCTGAACGAAGGAGGCCACCTTCGCCCCCACGATATAGACGCAGCAGGTATTCCAGGAGTCCC GAGTACTCTCCATCTCCGAGGGGAAGGCGTTACTCAAGGTCCATATCTCGGAGGGATAGAAGCTATGGAGAGCGTTCATACTCAAGGTCAAAGTCACCTT CCATTGACCGAATGAGAAGCCCAAGTGGTAGCAGGACTCGCAGCCTGGACTAA
AA sequence Show only first row Show all	>Lus10013539 pacid=23168758 polypeptide=Lus10013539 locus=Lus10013539.g ID=Lus10013539.BGIv1.0 annot-version=v1.0 MRRRSYSYSPSPPRGYGRPRRRSPSPRGRYGGRSRDMPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYNTGSEPERRRPPSPPRYRRSRYSRSP EYSPSPRGRRYSRSISRRDRSYGERSYSRSKSPSIDRMRSPSGSRTRSLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55310		ATSCL33, SR33, ...	SC35-like splicing factor 33 (...		Lus10013539 [exp]	0	1
AT3G58130			N-acetylglucosaminylphosphatid...		Lus10034805 [exp]	2.0	0.8388
					Lus10030083 [exp]	5.5	0.8296
AT3G24560		RSY3	RASPBERRY 3, Adenine nucleotid...		Lus10035028 [exp]	6.0	0.8341
AT5G59880		ADF3	actin depolymerizing factor 3 ...		Lus10025318 [exp]	7.4	0.8014
AT2G45530			RING/U-box superfamily protein...		Lus10000211 [exp]	8.0	0.8226
AT4G11600		LSC803, PHGPX, ...	glutathione peroxidase 6 (.1)		Lus10000603 [exp]	9.0	0.8027
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Lus10007254 [exp]	15.2	0.7889
AT4G29070			Phospholipase A2 family protei...		Lus10035314 [exp]	16.7	0.7949
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	17.9	0.8130
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	19.0	0.8097

Compare expression of checked genes

Lus10013539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.