Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 1016 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 590 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56690 570 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 510 / 6e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G25360 489 / 5e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 475 / 8e-157 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G16860 473 / 5e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 468 / 1e-153 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46460 457 / 6e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 457 / 1e-150 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013149 [exp] 613 / 0 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010998 [exp] 535 / 0 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 493 / 9e-164 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 500 / 7e-161 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030549 [exp] 475 / 3e-157 AT4G02750 468 / 2e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 475 / 8e-155 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028106 [exp] 469 / 2e-154 AT1G25360 916 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017297 [exp] 447 / 9e-154 AT4G02750 255 / 4e-80 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015256 [exp] 463 / 2e-153 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048800 [exp] 1135 / 0 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 620 / 0 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G006400 [exp] 618 / 0 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G019900 [exp] 540 / 0 AT4G02750 542 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 535 / 0 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G354400 [exp] 503 / 6e-169 AT5G46460 863 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 506 / 9e-169 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 499 / 4e-166 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.010G136200 [exp] 496 / 2e-165 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G038400 [exp] 489 / 4e-164 AT2G35030 701 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013540 pacid=23168725 polypeptide=Lus10013540 locus=Lus10013540.g ID=Lus10013540.BGIv1.0 annot-version=v1.0 ATGAGGAGATATATTGACTCTAGTTGCAAGTTTGGCCAGGAAATTCAACTAGAGAAACTTCCGAAAGGCAATACTCAATCCGTGTGTCCCGGCTCTTACC CTTCGAAGAAAGAGTTGCGATTGAAATGCAAAGAAGCCAAACATGACTTGAAAAGTTCTACGAACGACTCCGATATCCTGCAGTGGAACATGGCTATCTC CACCCACATGCGCAGTGGAAGATGCAATTCTGCTTTACGAATATTTAACTCGATGCATCGAAGGAGTTCAGTCTCGTATAATGCGATGATATCTGGGTAT ATTATGAATGACAAGTTCGGGCTTGCTAAAGAAATGTTTGATAAAATGCCACAAAGGGATTTGTTTTCCTGGAATGTCATGCTGAGCGGATATGTCAGGA ATCGGAGTCTTACTGCTGCCAGGGAATTGTTTGAGAAAATGCCTGTAAAGGATGTTGTTTCTTGGAACACTATGCTGTCTGGATATGCACAGAATGGCTT TGTCGACGAGGCCAGATGTATTTTTGATAAGATGCCTATTGTGAATGCAATTTCGTGGAACGGCTTGCTTTCTGCGTATGTGCAAAATGGTAGGTTAGAT GATGCGAGAAAATTGTTCGAGTCAAAGATGGATTGGGAGACTGTTTCTTGGAATTGTTTGATTGGTGGCTTTGTGAAGAGGAAGAGGTTGGTTGATGCGA GGAAACTTTTCGACCGGATGCCCATAAAAGACGAGGTTTCATGGAATACCATGATTACTGGTTATGCACAGAACGGAGGAGTGGAAGAAGCGCGGAGATT GTTTGATCAGTCTCCTACTAAGGATGTGTTTACATGGACTTCAATGGTTTCTGGATATGTCCAAAATGGTCTACTAAACGAAGCAAGAACAATTTTTGAC AGGATGCCTGTAAAGAATTCGGTTTCGTGGAACGCTATGATTGCTGGGTATGTTCAAAGTAAGAAAATGGACTTAGCTGCAGAACTATTTGAGGCAATGG CATCTAAAAATGTTAGTTCATGGAATACAATGATAACAGGATATGCGCAGGGTGGGGATATAACTCGCGCTAGGGAACTGTTTAATAAAATGCCTGAACA TGATTCTATATCTTGGTCTGCTATGATTGCTGGATATGTTCAGAACGGTTTCGGTGAAGATGCCCTGCACTTTTTTATCGAAATGGAAAGGGCCGGAGAA AGGTTGAACAGGTCCTCGATCACATGTGCTTTGACTGCATGTTCGGATATTGCTGCTTTGGAATTGGGGAAACAAGTGCACGGCCGGTTGGTAAAGGCCG GATACCATACGGGGTGTTACGTTGGGAATTCTGTCCTTGCAATGTATTGCAAGTGTGGAAGCATTGATGAAGCAAGCGATGTGTTTCGTGAGATAGCCGA AAGAGATGTTGTCTCATGGAACACTATGATCCATGGCTATGCCAGACATGGGTTTGGAAAAGAAGCCCTATCACTTTTTGAATCAATGAAGACAGAAGAT ATCAGACCAGACGATGTCACAATGGTTGGTGTACTGTCTGCGTGTGGTCACGCTGGCTTAGTAGACAAAGGGACTGAGTGTTTCTATTCAATGACCCAAG AGTATGAAATAACACCAAATCCTGTGCACTACACTTGCATGGTTGATCTCCTCGGTCGAGCTGGGCGGCTAAAGGAGGCCCAGGAATTAATAAAGAACAT GCCTTTTAAAGCAGATGCTGCAGCTTGGGGTGCTTTACTTGGCGCGAGCAGAGTGCATGGAAATATTGAACTGGGAGAGAGTGTTGCGGATACTATTTTC AGTATGGAGCCAAATAATTCCGGCATGTACATTCTCCTATCAAACTTATACGCCGCTTTAGGTAGATGGCCGGAAGTTGATAGGATGAGACGGAGAATGA GGAGTGAAGGCATCAAGAAAGTGCCTGGCTATAGTTGGCTCGAAGTGCAGAACGAAATCCATACTTTTCGAGTTGGGGACACCTCTCACCCAGACAAGGA TAGGATCTACGCCTTTTTAGCAGAGATGGTTCAGAAGATGAAGCAGGAGGGCTACATTTCGTTGACGAAATTGGTGTTACATGATGTTGAAGAGGAAGAG AAGGAGCATATGCTTGAGTACCACAGCGAGAAATTGGCGGTAGCGTACGGGATTCTGTCTGTCCCTGCTGGTAGACCGGTCCGCGTGATGAAGAACTTGC GGGTTTGTCAAGATTGTCATAACGCCATCAAATTCATGTCCAAGATTGTAGGGAGGTTGATTATATTACGGGATAATAATCGGTTCCACCACTTCAACAA TGGTTCGTGTTCGTGTGGCGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10013540 pacid=23168725 polypeptide=Lus10013540 locus=Lus10013540.g ID=Lus10013540.BGIv1.0 annot-version=v1.0 MRRYIDSSCKFGQEIQLEKLPKGNTQSVCPGSYPSKKELRLKCKEAKHDLKSSTNDSDILQWNMAISTHMRSGRCNSALRIFNSMHRRSSVSYNAMISGY IMNDKFGLAKEMFDKMPQRDLFSWNVMLSGYVRNRSLTAARELFEKMPVKDVVSWNTMLSGYAQNGFVDEARCIFDKMPIVNAISWNGLLSAYVQNGRLD DARKLFESKMDWETVSWNCLIGGFVKRKRLVDARKLFDRMPIKDEVSWNTMITGYAQNGGVEEARRLFDQSPTKDVFTWTSMVSGYVQNGLLNEARTIFD RMPVKNSVSWNAMIAGYVQSKKMDLAAELFEAMASKNVSSWNTMITGYAQGGDITRARELFNKMPEHDSISWSAMIAGYVQNGFGEDALHFFIEMERAGE RLNRSSITCALTACSDIAALELGKQVHGRLVKAGYHTGCYVGNSVLAMYCKCGSIDEASDVFREIAERDVVSWNTMIHGYARHGFGKEALSLFESMKTED IRPDDVTMVGVLSACGHAGLVDKGTECFYSMTQEYEITPNPVHYTCMVDLLGRAGRLKEAQELIKNMPFKADAAAWGALLGASRVHGNIELGESVADTIF SMEPNNSGMYILLSNLYAALGRWPEVDRMRRRMRSEGIKKVPGYSWLEVQNEIHTFRVGDTSHPDKDRIYAFLAEMVQKMKQEGYISLTKLVLHDVEEEE KEHMLEYHSEKLAVAYGILSVPAGRPVRVMKNLRVCQDCHNAIKFMSKIVGRLIILRDNNRFHHFNNGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10013540 [exp]	0	1
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10028841 [exp]	1.0	0.9059
AT4G32750			unknown protein		Lus10024698 [exp]	6.9	0.8254
AT5G04670			Enhancer of polycomb-like tran...		Lus10008985 [exp]	9.7	0.8404
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10028066 [exp]	9.9	0.8595
AT5G06810			Mitochondrial transcription te...		Lus10039774 [exp]	10.1	0.7694
AT4G14590		EMB2739	embryo defective 2739 (.1)		Lus10015604 [exp]	12.2	0.8016
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	12.7	0.8377
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	16.7	0.8472
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002097 [exp]	24.5	0.8412
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10033685 [exp]	24.7	0.8268

Compare expression of checked genes

Lus10013540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.