Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03990 230 / 2e-75 alpha/beta-Hydrolases superfamily protein (.1) AT4G37470 221 / 7e-72 alpha/beta-Hydrolases superfamily protein (.1) AT3G24420 217 / 6e-70 alpha/beta-Hydrolases superfamily protein (.1) AT4G24160 42 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G19850 42 / 0.0004 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017296 [exp] 501 / 0 AT3G03990 232 / 7e-76 alpha/beta-Hydrolases superfamily protein (.1) Lus10019303 [exp] 227 / 7e-74 AT4G37470 433 / 4e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10014859 [exp] 225 / 3e-73 AT4G37470 442 / 5e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10033087 [exp] 223 / 3e-72 AT3G24420 281 / 3e-95 alpha/beta-Hydrolases superfamily protein (.1) Lus10017735 [exp] 218 / 3e-70 AT3G24420 290 / 2e-98 alpha/beta-Hydrolases superfamily protein (.1) Lus10018686 [exp] 215 / 3e-69 AT3G03990 448 / 4e-161 alpha/beta-Hydrolases superfamily protein (.1) Lus10037651 [exp] 210 / 3e-67 AT4G37470 414 / 1e-147 alpha/beta-Hydrolases superfamily protein (.1) Lus10010398 [exp] 182 / 1e-56 AT4G37470 335 / 1e-116 alpha/beta-Hydrolases superfamily protein (.1) Lus10015633 [exp] 108 / 3e-29 AT4G37470 188 / 1e-60 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G062700 [exp] 326 / 5e-113 AT3G24420 253 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G155500 [exp] 235 / 5e-77 AT3G24420 331 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G145000 [exp] 226 / 1e-73 AT4G37470 468 / 7e-169 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G052000 [exp] 226 / 1e-73 AT4G37470 451 / 3e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G118900 [exp] 225 / 3e-73 AT3G03990 440 / 4e-158 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G016500 [exp] 214 / 3e-69 AT3G03990 434 / 1e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G027300 [exp] 44 / 5e-05 AT4G24160 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.005G235200 [exp] 43 / 0.0002 AT4G24160 645 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10013541 pacid=23168774 polypeptide=Lus10013541 locus=Lus10013541.g ID=Lus10013541.BGIv1.0 annot-version=v1.0 ATGGGAGGCATTGCCAGAGCTCTGAATGCCAACTTGTATGGCAATGGAACTCAAACTCTGGTCCTCTCATATGGCTATGGCTTAGACCAGAATGTTTGGC ACCTTCTCCTTCCTTACCTGGTCTGCTGCTTCAAAGTTCTGGTCTTTGACTTGGCTCACTCACCAAATGTTGTTACTCCTGGTTTCTACAACCCTCAAAA GTACTCAACTTTCAAAGGGTACTCACAGGATCTGGTGAATCTTCTTGATGAGCTTGAGCTTAAGAACACTGTCTACCTTGGTCACTCCATGTCTGCCATG ATTGGCTGCATAGCTGCAACTCAAAGGCCTGATCTTTTCCATCACCTCATTCTCCTCAGTGGCTCCCCAAGGTACATCAACGACAAGGGTTACATCGGGG GGTCTGAGCTGTCACAACTCAACGCGCTCTTCCAAACCATGGAAGGCAACTTCTCGAACTGGGTTCAAAACTTCGCGCCAATGGCCGTGACAGTGAACGA CACATCGGCAGTATCAGAATTCAAGCAAAGTTTAGGAAAGATGAACCCTAAGATAGCTGTTAGTGTAGCTAAAGCCGTGTTTTTAGGCGACTTGAGAGGC GTCCTACCGAAAGTTACAGTACCAGCTTCCATCATCCAGTCTAAGGACGACCTCTTCGTCCCGAAATTCATAGGGCATTACATGAAGCATAACCTCGGTG GACCTGCAAAGCTCAAGTTCCTCAAAGCAGAAGGCCATTTCCCTCAGCTCACAGCTCACCATTTGCTTCTGAAAGCCTTGAAGAAGTTTCATTTCATTAG TCACATTGAGAAATGTTAG
AA sequence Show only first row Show all	>Lus10013541 pacid=23168774 polypeptide=Lus10013541 locus=Lus10013541.g ID=Lus10013541.BGIv1.0 annot-version=v1.0 MGGIARALNANLYGNGTQTLVLSYGYGLDQNVWHLLLPYLVCCFKVLVFDLAHSPNVVTPGFYNPQKYSTFKGYSQDLVNLLDELELKNTVYLGHSMSAM IGCIAATQRPDLFHHLILLSGSPRYINDKGYIGGSELSQLNALFQTMEGNFSNWVQNFAPMAVTVNDTSAVSEFKQSLGKMNPKIAVSVAKAVFLGDLRG VLPKVTVPASIIQSKDDLFVPKFIGHYMKHNLGGPAKLKFLKAEGHFPQLTAHHLLLKALKKFHFISHIEKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03990			alpha/beta-Hydrolases superfam...		Lus10013541 [exp]	0	1
					Lus10035529 [exp]	3.5	0.8266
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10036665 [exp]	9.7	0.8320
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	10.4	0.8228
AT1G74910			ADP-glucose pyrophosphorylase ...		Lus10015338 [exp]	11.0	0.8169
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10009792 [exp]	13.5	0.7825
AT5G42890		ATSCP2	sterol carrier protein 2 (.1)		Lus10021727 [exp]	18.8	0.8119
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Lus10032672 [exp]	19.2	0.7956
					Lus10027571 [exp]	19.6	0.7508
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	21.2	0.8233
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10009220 [exp]	22.1	0.8091

Compare expression of checked genes

Lus10013541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.