Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64140 86 / 2e-22 RPS28 ribosomal protein S28 (.1) AT5G03850 86 / 4e-22 Nucleic acid-binding, OB-fold-like protein (.1) AT3G10090 86 / 4e-22 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017293 [exp] 102 / 2e-27 AT3G10090 113 / 1e-33 Nucleic acid-binding, OB-fold-like protein (.1) Lus10016222 [exp] 100 / 2e-27 AT3G10090 111 / 3e-34 Nucleic acid-binding, OB-fold-like protein (.1) Lus10029320 [exp] 100 / 2e-27 AT3G10090 111 / 3e-34 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G063100 [exp] 98 / 5e-27 AT5G64140 89 / 1e-25 ribosomal protein S28 (.1) Potri.008G013200 [exp] 96 / 3e-26 AT5G64140 90 / 5e-26 ribosomal protein S28 (.1) Potri.010G245400 [exp] 96 / 3e-26 AT5G64140 90 / 5e-26 ribosomal protein S28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF01200 [flax] [poplar] Ribosomal_S28e Ribosomal protein S28e
Representative CDS sequence Show only first row Show all	>Lus10013543 pacid=23168744 polypeptide=Lus10013543 locus=Lus10013543.g ID=Lus10013543.BGIv1.0 annot-version=v1.0 ATGCCGTACTATTCCAGAGCCGATGCCGACGCCGGGGACGACCCCGACCAGGACGAGCCCACCGCCNNNNNGCGAACAGGATCGGTCGGGGTAAGAGGCT CAGAAGAGCAAGGATCGGTTTATGCCCGCCGCACTGAATCGGAGTACGAAGGCGGCGGATCTGAGTACGGGAGGAGAAAGCAGAGCCACGGAGAGGAAGG TGAAGGCTATGGAAGGCGTCACGAATCTTCAGAGCATGGATCCGGTGGTTACGGAAGGCGCCGCGATGATGACGATGACGAGTCTCGATCTGGCGGCAGA TACGGTCACGGTGGTGGTGATGAAGAAGGCTACGGCCGCAAGAAATACGGAGGTAATGACTCTGACGAAGACGACGGTGATGAGGAGAAGAAGAAGCACC GGTACAAGCACCACCACAACCGTCGCAGCGATGACGATGAGATGGAATCCCAGACCAAGCATGCTTTGGTGGTGAAGGTGATGGGCCGTACTGGATCGAG GGGTCAAGTGACTCAAGTCAGGGTCAAGTTCCTCGATGACCCTAACCGTTTCATCATGAGGAATGTCAAGGGACCCGTGAGAGAAGGTGACATCCTTACC TTGCTCGAGTCTGAGAGAGAGGCCAGGAGACTTCGTTGA
AA sequence Show only first row Show all	>Lus10013543 pacid=23168744 polypeptide=Lus10013543 locus=Lus10013543.g ID=Lus10013543.BGIv1.0 annot-version=v1.0 MPYYSRADADAGDDPDQDEPTAXXRTGSVGVRGSEEQGSVYARRTESEYEGGGSEYGRRKQSHGEEGEGYGRRHESSEHGSGGYGRRRDDDDDESRSGGR YGHGGGDEEGYGRKKYGGNDSDEDDGDEEKKKHRYKHHHNRRSDDDEMESQTKHALVVKVMGRTGSRGQVTQVRVKFLDDPNRFIMRNVKGPVREGDILT LLESEREARRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	0	1
AT5G09510			Ribosomal protein S19 family p...		Lus10041168 [exp]	1.0	0.8944
AT3G08000			RNA-binding (RRM/RBD/RNP motif...		Lus10031534 [exp]	2.4	0.8680
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10007591 [exp]	2.4	0.8203
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	4.5	0.8170
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	10.8	0.8175
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	13.5	0.8091
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10038496 [exp]	22.4	0.7970
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10022692 [exp]	25.8	0.8133
AT5G13070			MSF1-like family protein (.1)		Lus10031261 [exp]	26.9	0.7993
AT1G57540			unknown protein		Lus10035345 [exp]	29.1	0.8063

Compare expression of checked genes

Lus10013543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.