Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78955 1080 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 1076 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 1074 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 1028 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 1003 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT2G07050 890 / 0 CAS1 cycloartenol synthase 1 (.1) AT1G78500 885 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15370 880 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1) AT5G36150 875 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT5G48010 874 / 0 AtTHAS1, THAS1, THAS, ATPEN4 Arabidopsis thaliana thalianol synthase 1, thalianol synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016441 [exp] 1261 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10016440 [exp] 997 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10016439 [exp] 984 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1) Lus10033355 [exp] 917 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10026079 [exp] 900 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10032146 [exp] 873 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10014538 [exp] 863 / 0 AT2G07050 1350 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 764 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 664 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G002400 [exp] 1159 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 1150 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 1045 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 1021 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.014G001500 [exp] 1007 / 0 AT1G78955 1064 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 894 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 891 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.014G002500 [exp] 880 / 0 AT1G78955 909 / 0.0 camelliol C synthase 1 (.1) Potri.018G148800 [exp] 877 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079300 [exp] 875 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10013546 pacid=23168738 polypeptide=Lus10013546 locus=Lus10013546.g ID=Lus10013546.BGIv1.0 annot-version=v1.0 ATGTGGAGGCTAAGGGTTGGTGATCGAGGCCGAGAAACCCAGCAAGGCCTTTTGTTCAGCACAAATGATTTCGTGGGAAGGCAGGTTTGGGAATTCGACG ATGGAGCTGGAACTGGTGACGAATTAGAGGCGGTCAAAGAAGCTCGGAACAGATTCCATAAGAATCGGTTTTGGGTTAAGCCAAACTCCGACCTACTATG GCGTATGCAGTTTTTGCGGGAAAAAGGATTCAAGCAGACGATCCCACCGGTGAGAATCGAAGAAGACGAAGAAGAAGATATCTCGTTCCAGAAGGCGAAG ATTGCAGTAAAGAGAGGAGCTCACTTCTTTTCAGCGCTTCAAGCCAACGACGGCCACTGGCCAGCTGAAAACGCAGGCCCTCTCTTCTTCCTCCCGCCTC TTGTCATCTGTCTGTACATCACCAGCAATCTCGCCTCCGTCCTCTCCGCCGAGCATCGCAAGGAGATTCTTCGCTACATCTACAATCATCAGAATGAAGA TGGTGGTTGGGGATTACACATTGAAGGACCGAGCACAATGTTCTCTACCGCTCTGAATTACATTTGTATGCGGATTCTGGTGGAAGTACCTGATGTTGGA AGAGATATCGCCTGCCAGAGAGCTAGGGATTGGATTCTTGATCATGGCGGCGTTACTTTCATTCCTTCTTGGGGGAAGACCTGGCTCGCGATTTTTGGCG TGTACGAATGGTCAGGAACCAATCCATTGCCACCAGAGCTTTGGCTGATTCCATCGTTTCTTCCTCTGCACATGGGGAAAATGCTGTGTTATTGTCGCCT GGTTTACATGCCAATGTCGTATCTGTATGGCAAAAGATTCGTCGGCCCTATAACTTCTCTCGTTCAGCAATTGAGGACAGAACTCCATACTCAGCCTTAC GACCAAATCGATTGGAATAAAACCCGGCACCTTTGTTGCAAGGAAGATCTCCTCAATCCCCATCCCGTGATCCAGGACTTAATCTGGGATGGCTTATATA TGCTTGCAGAGCCTCTACTTACTCGTTGGCCCCTCAACAAGCTCCTACGAAAGAAGGCTCTTGAAGTGACGATGAAGCACATTCATTATGAAGATGAATG CAGTCGTTATATTACCATTGGATGTATAGAAAAGGTTCTGTGTATGCTAGCATGCTGGGTAGAAGACCCCAAAGGTGATTCTTTCCAGAAGCATCTTGCT AGGATTCCTGACTATCTCTGGGTTGCTGAGGATGGGATGAAGATGCAAGCATTGCTAGCTTGCGGCATTAATGATGAGGAGATAGGAAATGTGTTGAAGA AAGGACATGACTACGTTAAGAATTCTCAGATGAAGGATGATCCTCATGGAGACTTCAAGAGCATGTACAGGCACATCTCGAAAGGATCCTGGACTTTCTC AGACCAAGATCACGGATGGCAAGTCTCCGACTGCACTGCTGAAGGTCTCAAATGTTGCCTTCTTCTCTCGAAGATGTCACCTCAACTGGTTGGCAAGCCC ATGGAACCGACTCGGTTGTTTGACTCTGTGAACATTCTTCTTTCTCTTCAGAGTAAAAATGGTGGCTTATCAGCTTGGGAACCTGCTGGAGCTCCAGAAT GGTTAGAGGTATTGAACCCAACAGACTTCTTCGAAGACACTGTCGTCGAGCACAAGTACGTTGAATGTACAGGAGCTGCCATTTCTGCAATGGTCGAGTT CAAGAAGCTCTACCCAGGGCATAGGATGAAAGAGATCAACAGGTTCGTGAAAGGTGCAGTAGGGTATATTGAAGCCACACAAACTCGTGAAGGAGGATGG TATGGAAACTGGGGAGTTTGCTTCACTTATGGAACTTGGTTTGCACTTGGAGGCCTAGCAGCCGTGGGGAAAAACTATAAAAATTCCTCCTCTGTTCGGA AAGGCGTTGATTTCCTGCTATCGATACAACAAAGTGATGGCGGGTGGGGAGAGAGCTACCTTTCATGCCCTCAGAAGAGGTATGTACCTCTCGAAGGCAA TCGGTCGAACTTAGTACAGACAGCATGGGGAATGATGGGTCTGATTCATGGAGGGCAGATGGATATAGATTCGACTCCATTACACCGTGCTGCGAAACTG CTGATAAACTCTCAAACAGAAGATGGCGATTTCCCACAGCAGGAAATTACTGGAGCTTTCATGAAGAACTGCATGTTACATTATGCTGCTTACAGAAACA TCTTCCCTTTATGGGCTCTAGCAGAATACCGCAAGTGTGCTGCTGCTTTCTTCACCAAGTGA
AA sequence Show only first row Show all	>Lus10013546 pacid=23168738 polypeptide=Lus10013546 locus=Lus10013546.g ID=Lus10013546.BGIv1.0 annot-version=v1.0 MWRLRVGDRGRETQQGLLFSTNDFVGRQVWEFDDGAGTGDELEAVKEARNRFHKNRFWVKPNSDLLWRMQFLREKGFKQTIPPVRIEEDEEEDISFQKAK IAVKRGAHFFSALQANDGHWPAENAGPLFFLPPLVICLYITSNLASVLSAEHRKEILRYIYNHQNEDGGWGLHIEGPSTMFSTALNYICMRILVEVPDVG RDIACQRARDWILDHGGVTFIPSWGKTWLAIFGVYEWSGTNPLPPELWLIPSFLPLHMGKMLCYCRLVYMPMSYLYGKRFVGPITSLVQQLRTELHTQPY DQIDWNKTRHLCCKEDLLNPHPVIQDLIWDGLYMLAEPLLTRWPLNKLLRKKALEVTMKHIHYEDECSRYITIGCIEKVLCMLACWVEDPKGDSFQKHLA RIPDYLWVAEDGMKMQALLACGINDEEIGNVLKKGHDYVKNSQMKDDPHGDFKSMYRHISKGSWTFSDQDHGWQVSDCTAEGLKCCLLLSKMSPQLVGKP MEPTRLFDSVNILLSLQSKNGGLSAWEPAGAPEWLEVLNPTDFFEDTVVEHKYVECTGAAISAMVEFKKLYPGHRMKEINRFVKGAVGYIEATQTREGGW YGNWGVCFTYGTWFALGGLAAVGKNYKNSSSVRKGVDFLLSIQQSDGGWGESYLSCPQKRYVPLEGNRSNLVQTAWGMMGLIHGGQMDIDSTPLHRAAKL LINSQTEDGDFPQQEITGAFMKNCMLHYAAYRNIFPLWALAEYRKCAAAFFTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Lus10013546 [exp]	0	1
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	2.0	0.9751
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	2.8	0.9691
AT3G18950			Transducin/WD40 repeat-like su...		Lus10023836 [exp]	3.5	0.9306
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	4.6	0.9626
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	4.6	0.9095
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	5.9	0.9546
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	6.3	0.9606
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	6.9	0.9145
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10015162 [exp]	7.3	0.9364
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	7.5	0.9489

Compare expression of checked genes

Lus10013546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.