Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44800 71 / 6e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT5G06600 69 / 3e-13 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G11910 64 / 1e-11 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT3G58200 62 / 3e-11 TRAF-like family protein (.1) AT3G58260 61 / 1e-10 TRAF-like family protein (.1) AT3G58210 60 / 2e-10 TRAF-like family protein (.1) AT3G58410 60 / 2e-10 TRAF-like family protein (.1) AT3G58250 60 / 2e-10 TRAF-like family protein (.1) AT3G58340 59 / 4e-10 TRAF-like family protein (.1) AT3G58270 59 / 6e-10 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017291 [exp] 379 / 2e-132 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10013548 [exp] 160 / 3e-47 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 133 / 2e-35 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 124 / 4e-33 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 119 / 5e-32 ND / Lus10027030 [exp] 108 / 8e-28 AT5G06600 120 / 8e-30 ubiquitin-specific protease 12 (.1.2.3) Lus10012948 [exp] 96 / 2e-24 AT3G58360 64 / 3e-12 TRAF-like family protein (.1) Lus10029309 [exp] 75 / 4e-15 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034129 [exp] 71 / 1e-14 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198300 [exp] 70 / 2e-13 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 69 / 2e-13 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 69 / 3e-13 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 68 / 8e-13 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G099600 [exp] 59 / 6e-10 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.008G005300 [exp] 58 / 1e-09 AT3G17380 317 / 7e-108 TRAF-like family protein (.1) Potri.008G005650 [exp] 52 / 9e-08 AT3G17380 281 / 3e-94 TRAF-like family protein (.1) Potri.001G130700 [exp] 50 / 6e-07 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.010G075000 [exp] 48 / 3e-06 AT1G04300 855 / 0.0 TRAF-like superfamily protein (.1.2.3.4) Potri.003G103200 [exp] 47 / 4e-06 AT3G17380 251 / 2e-82 TRAF-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013547 pacid=23168733 polypeptide=Lus10013547 locus=Lus10013547.g ID=Lus10013547.BGIv1.0 annot-version=v1.0 ATGGATGCCAAGCATCAGCTGGTCACAGAGACCGTCAAATTCAGATGGATAATTGAGAATTATTCAACGCTGAAAGAAACCAGACACTATTCCTACACCT TCGTAGCTGGCGGTCACAAATGGAGGGTCATCGTTTACCCAAAGGGAAAGAAGGCTGCCGATTTTCTATCAGTATTTTTGGATTTCGTTAAAATGATGCC TAATGGTTGTATGGTTCCAGCTAACATCAACTTAACCATTGTCAACCAACTTGCCATCGACTCCTCTTTGAAACGGAGGAAGTACCCTTTTGTGTTTTCT ACAGAAGGGAGTTCATCAGATGCTGCTGCTGATGAACCAAAAGTAATCGAGGCCGATCAGCCTCCAGAAGATATCAGACCATCATTGACTCAACTATCTT CTAAAGCGAGCAAGGTTGATAATCCTGCAAATGCAAATACCGGCAGTCGCTTCTCTCCGGCTAGTGTTCAATTAGCCTGCAGAAACCTGATTTCGGAACT GTCGATAGTGACTAGTAATCCAGGGAGCTGTTTGCTACAACAGCAAAAGGAGAAACTCGTTGTGTTGTTTGGTGTTTCGCTCGAGACCCTCTGCCAAACC AAATTACGGGACAATGTCGCGAGTCTTGCTCTCGAAATTCTCGATCAGACTACTGAATCTGTCGAGACGAAAGTTCTGATAGACTTGCTCTCGCGCCTAG CCGAGTTGAAGGACACGGTTCCTGTTGAATAA
AA sequence Show only first row Show all	>Lus10013547 pacid=23168733 polypeptide=Lus10013547 locus=Lus10013547.g ID=Lus10013547.BGIv1.0 annot-version=v1.0 MDAKHQLVTETVKFRWIIENYSTLKETRHYSYTFVAGGHKWRVIVYPKGKKAADFLSVFLDFVKMMPNGCMVPANINLTIVNQLAIDSSLKRRKYPFVFS TEGSSSDAAADEPKVIEADQPPEDIRPSLTQLSSKASKVDNPANANTGSRFSPASVQLACRNLISELSIVTSNPGSCLLQQQKEKLVVLFGVSLETLCQT KLRDNVASLALEILDQTTESVETKVLIDLLSRLAELKDTVPVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44800			Meprin and TRAF (MATH) homolog...		Lus10013547 [exp]	0	1
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10003838 [exp]	4.2	0.8506
					Lus10029656 [exp]	4.9	0.8684
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	5.5	0.8792
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10028513 [exp]	7.2	0.8339
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012887 [exp]	10.2	0.8797
AT2G33030		AtRLP25	receptor like protein 25 (.1)		Lus10003462 [exp]	13.9	0.7793
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	16.5	0.8314
AT1G69550			disease resistance protein (TI...		Lus10001788 [exp]	22.9	0.8532
AT4G26770			Phosphatidate cytidylyltransfe...		Lus10018934 [exp]	24.4	0.7614
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	26.1	0.8669

Compare expression of checked genes

Lus10013547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.