Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06600 56 / 3e-08 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58250 55 / 3e-08 TRAF-like family protein (.1) AT3G58260 54 / 5e-08 TRAF-like family protein (.1) AT3G58270 52 / 3e-07 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G11910 52 / 6e-07 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT2G05420 49 / 2e-06 TRAF-like family protein (.1) AT3G58220 49 / 2e-06 TRAF-like family protein (.1.2) AT3G58200 49 / 3e-06 TRAF-like family protein (.1) AT3G27040 49 / 4e-06 Meprin and TRAF (MATH) homology domain-containing protein (.1) AT1G31390 48 / 4e-06 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017290 [exp] 403 / 1e-141 ND / Lus10017291 [exp] 251 / 1e-80 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 219 / 8e-64 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 199 / 4e-60 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10013547 [exp] 149 / 1e-42 AT3G44800 72 / 2e-14 Meprin and TRAF (MATH) homology domain-containing protein (.1) Lus10007254 [exp] 137 / 2e-35 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10008233 [exp] 134 / 2e-35 ND / Lus10023536 [exp] 117 / 3e-32 ND / Lus10013551 [exp] 122 / 2e-30 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G198300 [exp] 61 / 6e-10 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 61 / 8e-10 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 61 / 9e-10 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.010G245100 [exp] 60 / 1e-09 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.001G130700 [exp] 44 / 0.0001 AT3G17380 244 / 2e-79 TRAF-like family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013548 pacid=23168711 polypeptide=Lus10013548 locus=Lus10013548.g ID=Lus10013548.BGIv1.0 annot-version=v1.0 ATGTCGCCGGCGAAAAATCAGCTGGTCAGTAGAATAGAGACCGTGAAGTTCAGATGGACGATTGAGGACGTCTCGACGCTGAAGAAAGGAGTCAAGCTCT GTTCCGAGACCTTCTTAGTTGGCGCCCACAGATGGAGGATTCATGGTTACCCAAAGGGAAGTGGTTCCGATCCTCTGTCAGTAGCTTTATATGTGATATT CGTTGATTCGGAAAAGATGCCCGATGGATGGATTGTGCCAGCTGATTGCAGCTTAACAATTGAACCGCCTTCATCAGAAGCTGCTGCTGATGTACCTACA AAGATCGAGGCGGATCGACCTCCTAAAGATATCAAAGTATTGCCGGATGTACTCCCTTCACAAGTTGATAATCCTGAATTCTGTCCACCAAGTGTGCAAA TATCCTGCAGAAACCTAATATCGGAGCTGTCAACAATGATTAGCAGTCGCAGCTCTTCATCATCTGACAATGGTCTAGGTTTGCTACAACAGCAAAAGGA GAAACTCCTTGGTTTCTTCGACATGTCACTCGAGGCTATCTGCGAAACCAAATCACTTGATGAAGTCGAGAACATCGCTCTCGAAATTCTTGATCAGGCA AGTACTGATCATCCTCTCGAGAAGACAGTTCTGAAAGACTTGATCTCACGCCTAGCCGAGTTCAAGGAGACCGTTCCAATCTCTCTGTCAACGATCGAAA CCAGCAGCGTTGTCGAATCATCTGTGGGCCGGATGACCAAAGATCTGGAGCAAAGGTTGGTTCACAAGAAGGGGCAGTTGGCTTCTCTAGAGGCAGAGGT GTGTAGACTCGGTGAAGAAAGATCAAAGCTGGACGTCGAAATTCAGCAATTAAATGCAAGCAAGGCGAAGGTTGTAGCTCATACGAGTTGTACTGAGATC GAGCTGGAGAAGGCCGTCGAAGATGCTGGCAAGCTTCTGGATGAAGTTAACGAGCAACGCGATAAAAGGAAGCGAGCGGGAGAAGAGCGGATGAGAGCCA AGGATAAGCTTGCTCAGTCTAATGCAAGCTGGAAGCTTTTCAAGGAGAACTTAGGATGGTAA
AA sequence Show only first row Show all	>Lus10013548 pacid=23168711 polypeptide=Lus10013548 locus=Lus10013548.g ID=Lus10013548.BGIv1.0 annot-version=v1.0 MSPAKNQLVSRIETVKFRWTIEDVSTLKKGVKLCSETFLVGAHRWRIHGYPKGSGSDPLSVALYVIFVDSEKMPDGWIVPADCSLTIEPPSSEAAADVPT KIEADRPPKDIKVLPDVLPSQVDNPEFCPPSVQISCRNLISELSTMISSRSSSSSDNGLGLLQQQKEKLLGFFDMSLEAICETKSLDEVENIALEILDQA STDHPLEKTVLKDLISRLAEFKETVPISLSTIETSSVVESSVGRMTKDLEQRLVHKKGQLASLEAEVCRLGEERSKLDVEIQQLNASKAKVVAHTSCTEI ELEKAVEDAGKLLDEVNEQRDKRKRAGEERMRAKDKLAQSNASWKLFKENLGW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10013548 [exp]	0	1
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	4.2	0.8286
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10008650 [exp]	7.1	0.8139
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	7.1	0.8291
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	7.7	0.8133
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10007215 [exp]	8.7	0.8110
AT5G41980			unknown protein		Lus10024452 [exp]	12.0	0.7880
AT1G70180			Sterile alpha motif (SAM) doma...		Lus10030661 [exp]	12.7	0.8067
AT1G15215		SHH1, DTF1	SAWADEE homeodomain homolog 1,...		Lus10038276 [exp]	13.2	0.7611
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	13.7	0.7740
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10015345 [exp]	16.0	0.7786

Compare expression of checked genes

Lus10013548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.