Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03220 348 / 7e-114 ATFUT1, ATFT1, FT1, MUR2 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) AT2G03210 346 / 3e-113 ATFUT2, FUT2 fucosyltransferase 2 (.1) AT1G14100 314 / 4e-101 FUT8 fucosyltransferase 8 (.1) AT1G14070 309 / 3e-99 FUT7 fucosyltransferase 7 (.1) AT2G15390 307 / 2e-98 ATFUT4, FUT4 fucosyltransferase 4 (.1.2) AT1G14080 299 / 4e-95 ATFUT6, FUT6 fucosyltransferase 6 (.1) AT2G15350 293 / 7e-94 ATFUT10, FUT10 fucosyltransferase 10 (.1) AT1G14110 287 / 4e-91 ATFUT9, FUT9 fucosyltransferase 9 (.1) AT2G15370 288 / 8e-91 ATFUT5, FUT5 ARABIDOPSIS FUCOSYLTRANSFERASE 5, fucosyltransferase 5 (.1) AT1G74420 271 / 2e-84 ATFUT3, FUT3 fucosyltransferase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026128 [exp] 454 / 2e-155 AT2G03220 395 / 4e-132 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041642 [exp] 438 / 4e-149 AT2G03220 454 / 8e-155 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10024076 [exp] 378 / 1e-125 AT2G03220 374 / 5e-124 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10008696 [exp] 371 / 2e-122 AT2G03220 504 / 3e-174 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041644 [exp] 347 / 1e-113 AT2G03220 379 / 7e-126 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041645 [exp] 342 / 3e-112 AT2G03220 315 / 2e-101 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10012571 [exp] 340 / 1e-110 AT2G03220 349 / 7e-114 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Lus10041641 [exp] 325 / 1e-104 AT1G14100 426 / 5e-144 fucosyltransferase 8 (.1) Lus10029049 [exp] 320 / 2e-102 AT2G03220 450 / 5e-153 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G034100 [exp] 412 / 1e-138 AT2G03220 560 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191200 [exp] 403 / 5e-135 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191500 [exp] 390 / 7e-130 AT2G03220 570 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191401 [exp] 375 / 2e-122 AT2G03220 555 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.008G090000 [exp] 365 / 4e-120 AT2G03220 744 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.001G033800 [exp] 367 / 1e-119 AT2G03220 524 / 3e-180 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1) Potri.003G191301 [exp] 337 / 2e-108 AT2G03220 524 / 0.0 MURUS 2, ARABIDOPSIS THALIANA FUCOSYLTRANSFERASE 1, fucosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03254 [flax] [poplar] XG_FTase Xyloglucan fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10013549 pacid=23168772 polypeptide=Lus10013549 locus=Lus10013549.g ID=Lus10013549.BGIv1.0 annot-version=v1.0 ATGACACCCTTTGGTCTCAAAGCCATTCCAAGAGCTTTAGCTGCTATTATTACCCTGTCTCTTTGCTTCATCATTGCCTACCAAATTTATTCAACCAGTC TCTTCTCAGAAATTCTTCTTCTCCCCCTCAAACAGACTACTGTAACTCACGTACCGACACTAGAAGAACAACAATCATCCGATTGTTCTTCTCGTGTCGA AAGGAGCTCATCATCTCCTTCTCCTCACCTCGCTTCCAGGCTCCACGAGTATGAACGGCGTCACAAGGCCTGCGAACCCCTCTCGGAGTCGTTCAATCGG AATTTGAACGAACTAATCGGCAGGAAGAGTCCCACATCGCCAGAGAGAAGTAAGGACGTCAAATTTGAATGCAGATACGTTGTGTATACCCCAATTAACG GACTTGGGAACAGAATGCTCGATATTGCCTCGGCATTTCTCTACGTCCTCCTCACAAACCGCGTGCTTCTTGTCGATTTTGGAGACGACATGACCGATGT CTTCTGCGAGCCGTTCCGAAACTCGACTTGGCTCCTTCCTAGAGACTTCCCTTTCAGGGAACAAATGTACAGTCCGCAGTTTAGAGAAATTTACAGCTTC GGAAGCCTGTTCAGGAACAAGAAGGAAAAGCTGGCGAATTTTTCATCTGTTTTGAAGCTTCATCTCTCGAACGAATGCGACCCTCACGACTGGCGTTTCT TCGAAGACGAAAGCCAGGAACTTCTCCAGAGCGTGCCGTGGCTGATCCTTGCATCGGACCAGTATTTCGCTCCGTACCTATTCCTGATGCCAGGTTTCAG GACGGAACTCGACAGGCTTTTTCCTGACAAGGAGACGGTTTTTCATCACTTGGGGAGATACCTTTTCAACCCGTCGAACGAAGTTTGGGGACTTGTCACA CGATTCCACAGGACATATCTCGCAAAAGCGGATCAAAGAATCGGACTCCACGTAAGAGTCGTTCGAGCGGTCAACATCTCGACCGCATTTCTCCTGAGCA GGATTCTAGGATGCACTCAGAACGAAGCCCGAGTCTTGCCTAGACTACAACAACATAACAACACGTGTTATCGAACGAAGAATCCCCCGAAAACGAAGAC ATTTTCGAAGGCGGTTCTGGTGGCGTCGTTGTCGGAGGAATTCTATTCCGAACTAAAGAGCATTTTCTGGACGAGGTCAACGATGGATGTGAAAGATGAA GAGATCGCGGTCGGGGTTTACCAGACTAGTCATGAAGATGTGCAGCTCTCACTTGACAATTCACACAATATGAAGGCTCTGGCTGATATTTATCTTCTGA GTATGTGTGATGTTTTGGTGACCAGTCCCGGGTCGACTTTCGGGTACGTGGCTCAGAGTCTGGGGAACTTGAATCCTTGGGTGTTGGAGATATATCCGGA TCAGGTTAATGTTACCGGTAGTTGTGCACAATCTGTTTCGAAAGAGCCGTGCTATCATTTTCGACCCATGTTCTGGGAGAAGAAGGCACCGAAAACAGTT GCTCTTCCTCAAGGTGGAATGGTACCTTCCAATGTTGTGCCATGTGAAGATGTAGATTTTGGTGTGAAGCTTTCCAATGTGGTGTATAAGTAA
AA sequence Show only first row Show all	>Lus10013549 pacid=23168772 polypeptide=Lus10013549 locus=Lus10013549.g ID=Lus10013549.BGIv1.0 annot-version=v1.0 MTPFGLKAIPRALAAIITLSLCFIIAYQIYSTSLFSEILLLPLKQTTVTHVPTLEEQQSSDCSSRVERSSSSPSPHLASRLHEYERRHKACEPLSESFNR NLNELIGRKSPTSPERSKDVKFECRYVVYTPINGLGNRMLDIASAFLYVLLTNRVLLVDFGDDMTDVFCEPFRNSTWLLPRDFPFREQMYSPQFREIYSF GSLFRNKKEKLANFSSVLKLHLSNECDPHDWRFFEDESQELLQSVPWLILASDQYFAPYLFLMPGFRTELDRLFPDKETVFHHLGRYLFNPSNEVWGLVT RFHRTYLAKADQRIGLHVRVVRAVNISTAFLLSRILGCTQNEARVLPRLQQHNNTCYRTKNPPKTKTFSKAVLVASLSEEFYSELKSIFWTRSTMDVKDE EIAVGVYQTSHEDVQLSLDNSHNMKALADIYLLSMCDVLVTSPGSTFGYVAQSLGNLNPWVLEIYPDQVNVTGSCAQSVSKEPCYHFRPMFWEKKAPKTV ALPQGGMVPSNVVPCEDVDFGVKLSNVVYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10013549 [exp]	0	1
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10029214 [exp]	2.0	0.9890
AT5G05950		MEE60	maternal effect embryo arrest ...		Lus10016474 [exp]	2.4	0.9860
AT1G43790		TED6	tracheary element differentiat...		Lus10018925 [exp]	4.2	0.9863
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10036639 [exp]	4.6	0.9689
AT1G10460		GLP7	germin-like protein 7 (.1)		Lus10010726 [exp]	6.0	0.9836
AT3G03550			RING/U-box superfamily protein...		Lus10009326 [exp]	6.3	0.9508
AT1G05060			unknown protein		Lus10030021 [exp]	6.9	0.9734
AT2G44260			Plant protein of unknown funct...		Lus10017580 [exp]	8.1	0.9738
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10024167 [exp]	8.4	0.9745
AT1G43790		TED6	tracheary element differentiat...		Lus10029760 [exp]	8.4	0.9767

Compare expression of checked genes

Lus10013549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.