Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11910 53 / 1e-06 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 51 / 2e-06 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58270 44 / 0.0002 Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.1), Arabidopsis phospholipase-like protein (PEARLI 4) with TRAF-like domain (.2) AT3G44790 43 / 0.0006 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008233 [exp] 123 / 8e-30 ND / Lus10025569 [exp] 119 / 1e-28 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10008326 [exp] 109 / 1e-26 ND / Lus10013551 [exp] 115 / 7e-26 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10013548 [exp] 105 / 3e-24 AT5G06600 55 / 3e-08 ubiquitin-specific protease 12 (.1.2.3) Lus10017290 [exp] 103 / 5e-24 ND / Lus10019772 [exp] 107 / 9e-24 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10007254 [exp] 99 / 3e-21 AT1G14340 244 / 2e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10017291 [exp] 94 / 4e-20 AT5G06600 100 / 3e-22 ubiquitin-specific protease 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G245100 [exp] 58 / 2e-08 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G012600 [exp] 54 / 6e-07 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 52 / 1e-06 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.006G198300 [exp] 52 / 1e-06 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [flax] [poplar] TRAF PF00917 [flax] [poplar] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Lus10013550 pacid=23168727 polypeptide=Lus10013550 locus=Lus10013550.g ID=Lus10013550.BGIv1.0 annot-version=v1.0 ATGACTGTGAAGCTTAGTTACTTAATTCCTCCAACTTCTGCCCCGTTTTATCTGAGCAGGAAGGTTCGTACCAACCCGAAACGGTATCGTCTCCCCGACT ATTTCCCATTGTTCTTGCTCTGTTGCTCCGATCCTGAAGTCAAGCTCGAAAGTGGAGGACAACGACCTCGTACCATTCAAGCCGAGTACAGGCTCACGCT AGTTGACCAGATCAACGGCCGCTCCTTCACCAAACGGGGTGGCAAGCAGGATTTCAAGATAGGCGGGGGAGGACGGGGATTCGAATCTTTTATACCCTAC AAGAATCTTTTCAATCCTATTGAAGGGTTCATTGTGAATGACACAATCGTTATCGAGGCTCAAGTTTCGATCATTTTGCAGCAGGAACAGTCTTATGCAG TCAATGCAGCTGACCCACCAGCTGTGGAAATTGACTTGACATCTGATCCCATTGATTCTCAGCCGGATCGTTCATCCAGTCAGGTTGCTGCTAGTCCGGT TAATGTTACTACAACAAATGAATTTGGAAAATCGCAAGGCCGTAAAATGGGCATCAGAAGCAGGATGAAGCCCATAGAGGCCGAGTGGAAGATTCTAGGT TTCGCCAAGTACGAAACCGCCAAGTCTGATAAGTTCCTAGCCAGTGGTTGTGAATGGAATATTGTTTCTAAGCTGAAACGATATGATGGCATAGATTACC TCTCTCTATTCCTGCGTTGTTGTTCCGATATGGGAGGAATTGACAGCTGGAGACATCGGAAAATGTACGCTGAGTATTCCTTCACTCTGGTCGACCAAAT CAACAATGTCAATTCCATAACACAAGGGGGGGGAAGGGATTTCAAGGTAGGCGGTAAAGGGTGGGGATATAAAGAGTTTATCCCTCTCGGAGAGCTCTTC GATCCAGATAAAGGTCTCGTAGTGAATAACACTGTCCTGCTTGAAACTACAGTGTCCACAGAGGAACGGACATTGTCAGATTCTGACTCCGATTATGATC ATCATCCAAACCAAACGTTTATCAGAAGATCTACGAAAGATTGGCAGGATTCATTGAAGAGGAAAAGATCAGCAGCTCAGGAGGAACGGAGATTGTTCGA TTCTGACTCTGATTCTGATCATCAGCCTAACCGGACGTCTATCAGAAGATCGATGAAGGATAGGCATGATTCATCAAAGAACAAAAGATCAGCAGCTCAG GAGGAACCTGAAAGGACGGAGAGTACTAATCCTTTAAAAAATCAGCAGCAGGATCCAATAATAATAATATCATCAGATTCCGATAGCAATGGACCGGACG ATATCGAGCATGAAACAGATCATCAGCCTAATGGTCCATCTCTCAGACAAGTGAAAGTCGAGCAGGTTTCAGAACTGAGAAATGCAGCTGATCCGGAGGT GCCAGAACGGGTCCAAACTGCTCTTTCGTCCAATCCAAAGGCTGAATACTATCCAGACTACTCAGGATTTACTTCGAGCAAATTGATAGAAGAGCTATCG ATGGTAACTATTAATGCAAAATCTCATCCTATCAACAGACCAGCCTTATCACTCGATCAGCATAGGATGAAGATGGCTCGATACTTGAACATGCCGCTCG AGCTCCTCCACAAATCCGACTCGTTAGACAATGTCGAGCGAATCGCCCTCCATATCACCAATCACGACCCGAATGTGAAAGTCGATAAGGAGAATCTAAA GACATTATTGTCAGACATTAAGCAGGGCGTCTCCGGGTCAATATGCATGATCGAAACATCAAGTGCCATCGAAACTTCAGCCGCACAGATGATGGAGGAG CTGGAAGGGAGGCTGAATTACAGGCAGAAGCAGATGAGGTGGCTTGAGGTTGAAGTTTCAAGACTTGGGAAAGAGGAGAAGAATTTGGAGGCCGAGATTC AACAGCTAATTGCGCGAAAGGGCAGACTCGGGGATCGAATGAAATCGACTGCTGATGAGCTGGGGAAGGTGGGTCAAGAAGCTTCAAGGGAGTTGGAAGA AGTGAAGGAGCAGAGTAAAAAACGGAAGCGTGCTGCAGAGGCTAAGTTGGCTGCAGAGGAGAATCTAGCTCAGCTCAACAGAGCCTGGAAAGGCCTAAAG CAGAAGCTGGGACTTGATTGTAATTAA
AA sequence Show only first row Show all	>Lus10013550 pacid=23168727 polypeptide=Lus10013550 locus=Lus10013550.g ID=Lus10013550.BGIv1.0 annot-version=v1.0 MTVKLSYLIPPTSAPFYLSRKVRTNPKRYRLPDYFPLFLLCCSDPEVKLESGGQRPRTIQAEYRLTLVDQINGRSFTKRGGKQDFKIGGGGRGFESFIPY KNLFNPIEGFIVNDTIVIEAQVSIILQQEQSYAVNAADPPAVEIDLTSDPIDSQPDRSSSQVAASPVNVTTTNEFGKSQGRKMGIRSRMKPIEAEWKILG FAKYETAKSDKFLASGCEWNIVSKLKRYDGIDYLSLFLRCCSDMGGIDSWRHRKMYAEYSFTLVDQINNVNSITQGGGRDFKVGGKGWGYKEFIPLGELF DPDKGLVVNNTVLLETTVSTEERTLSDSDSDYDHHPNQTFIRRSTKDWQDSLKRKRSAAQEERRLFDSDSDSDHQPNRTSIRRSMKDRHDSSKNKRSAAQ EEPERTESTNPLKNQQQDPIIIISSDSDSNGPDDIEHETDHQPNGPSLRQVKVEQVSELRNAADPEVPERVQTALSSNPKAEYYPDYSGFTSSKLIEELS MVTINAKSHPINRPALSLDQHRMKMARYLNMPLELLHKSDSLDNVERIALHITNHDPNVKVDKENLKTLLSDIKQGVSGSICMIETSSAIETSAAQMMEE LEGRLNYRQKQMRWLEVEVSRLGKEEKNLEAEIQQLIARKGRLGDRMKSTADELGKVGQEASRELEEVKEQSKKRKRAAEAKLAAEENLAQLNRAWKGLK QKLGLDCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10013550 [exp]	0	1
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10022729 [exp]	3.3	0.9360
AT2G41660		MIZ1	mizu-kussei 1, Protein of unkn...		Lus10018050 [exp]	3.5	0.9198
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	5.5	0.9198
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Lus10014054 [exp]	5.7	0.9214
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	5.7	0.9208
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10022808 [exp]	7.4	0.9099
AT3G06100		NIP7;1, NLM8, N...	NOD26-LIKE MIP 8, NOD26-LIKE M...		Lus10021935 [exp]	8.0	0.8445
					Lus10001533 [exp]	9.2	0.9203
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10033680 [exp]	9.5	0.9142
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	10.6	0.9193

Compare expression of checked genes

Lus10013550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.