Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16600 269 / 2e-93 ROC3 rotamase CYP 3 (.1.2) AT4G34870 256 / 2e-88 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G21130 255 / 6e-88 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 252 / 7e-87 ROC1 rotamase CYP 1 (.1) AT3G56070 237 / 7e-81 ROC2 rotamase cyclophilin 2 (.1.2) AT2G29960 208 / 5e-69 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT5G58710 204 / 2e-67 ROC7 rotamase CYP 7 (.1) AT3G55920 199 / 2e-65 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G63400 196 / 6e-62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT5G13120 182 / 4e-58 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017258 [exp] 317 / 2e-112 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10007579 [exp] 265 / 4e-92 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 263 / 6e-91 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10042553 [exp] 243 / 3e-83 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10022012 [exp] 239 / 2e-81 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10018238 [exp] 207 / 2e-68 AT2G29960 348 / 4e-124 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10040666 [exp] 207 / 2e-68 AT5G58710 347 / 2e-123 rotamase CYP 7 (.1) Lus10014846 [exp] 198 / 8e-64 AT2G29960 310 / 6e-107 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Lus10020992 [exp] 192 / 8e-61 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G240200 [exp] 282 / 1e-98 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 274 / 1e-95 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.009G130100 [exp] 266 / 2e-92 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 261 / 2e-90 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 236 / 2e-80 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G046500 [exp] 206 / 4e-68 AT2G29960 323 / 4e-114 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) Potri.001G251700 [exp] 202 / 2e-66 AT5G58710 313 / 6e-110 rotamase CYP 7 (.1) Potri.010G189000 [exp] 201 / 4e-66 AT3G55920 303 / 4e-105 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G215800 [exp] 200 / 4e-61 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G135500 [exp] 190 / 5e-60 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10013552 pacid=23168779 polypeptide=Lus10013552 locus=Lus10013552.g ID=Lus10013552.BGIv1.0 annot-version=v1.0 ATGGCGGCCAATCCCAAAGTCTACTTCGACATGTCCATCGGTGGCGTCCCCTCTGGACGTATAGTGATGGAGCTCTTCAAGGACACGACCCCCATGACCG CCGAGAACTTCCGCGCTCTCTGCACCGAGGAGAAAGGGGTCGGCCGGAGAGGCAAGCCCCTCCACTACAAGGGATCCAAATTCCACCGTGTCATCCCCGG GTTCATGTGCCAGGGCGGCGATTTCACTGCTGGCAACGGCACCGGCGGCGAATCCATCTACGGAAACAAGTTCCGTGACGAGAACTTCATCAAGAAGCAT ACCGGCCCTGGAATACTTTCGATGGCAAACGCCGGACCTGGGACCAACGGATCTCAGTTCTTTATATGCACTGACAAGACGGAGTGGCTGGACGGGAAGC ACGTCGTGTTTGGCAAAGTTGTGGAAGGGATGAATGTGGTCAAGGCAGCCGAGCGGGTCGGCTCCCAATCGGGGCGAACCGCCAAGCCGGATGTGATCTC TGGCTGTGGTCAGCTCTGTTAA
AA sequence Show only first row Show all	>Lus10013552 pacid=23168779 polypeptide=Lus10013552 locus=Lus10013552.g ID=Lus10013552.BGIv1.0 annot-version=v1.0 MAANPKVYFDMSIGGVPSGRIVMELFKDTTPMTAENFRALCTEEKGVGRRGKPLHYKGSKFHRVIPGFMCQGGDFTAGNGTGGESIYGNKFRDENFIKKH TGPGILSMANAGPGTNGSQFFICTDKTEWLDGKHVVFGKVVEGMNVVKAAERVGSQSGRTAKPDVISGCGQLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	0	1
					Lus10033847 [exp]	1.4	0.9762
					Lus10018997 [exp]	2.0	0.9736
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	2.2	0.9554
AT1G52400		ATBG1, BGLU18, ...	BETA-GLUCOSIDASE HOMOLOG 1, A....		Lus10030575 [exp]	2.4	0.9592
AT3G16330			unknown protein		Lus10038274 [exp]	2.8	0.9576
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	3.2	0.9502
AT1G63310			unknown protein		Lus10033253 [exp]	4.6	0.9531
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10010766 [exp]	5.7	0.9529
AT5G50890			alpha/beta-Hydrolases superfam...		Lus10031455 [exp]	6.2	0.9403
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	6.3	0.9123

Compare expression of checked genes

Lus10013552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.