Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30755 78 / 2e-17 Protein of unknown function (DUF668) (.1) AT1G34320 74 / 6e-16 Protein of unknown function (DUF668) (.1) AT5G08660 54 / 4e-09 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017260 [exp] 242 / 9e-78 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 228 / 3e-73 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 73 / 1e-15 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 72 / 3e-15 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 70 / 2e-14 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 66 / 3e-13 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021400 [exp] 116 / 7e-31 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 111 / 3e-29 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 77 / 5e-17 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 77 / 6e-17 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 61 / 2e-11 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 60 / 4e-11 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013553 pacid=23168723 polypeptide=Lus10013553 locus=Lus10013553.g ID=Lus10013553.BGIv1.0 annot-version=v1.0 ATGGGGGCAGTGTGTGCCGGCGGGGTGAAGAAGGATGTTAACGCCAAGCCTGCTCAGGTTAAGAGATTCTCCGATAAGTTAGCGAAGCCGCAGAAGAGCT TGGCCAAGGAGTTGGACAATTCCAGTGGAGCTAAGATGAATAAGAATAAGAATAAGAATAAGAAGCAGACAACGACGATGCAGCCGGAGAAGCACTATTC CGGCGAGCTGTTGCTGTCTTTTTCAAGAGAGCTTAAGCCTTCCAAGCCAGCTGCAGAAGGACCGCCAGCTAAGGTTACTCACAAAACCTCCTTCCTGGGG AAAGCAGGCACAATGGGGTTGGAGAAAACTCTAGAAGTTCTAGACACCCTTGGAAGTAGTATGTCAAATTTGAATGCTCGGAGTGGGTTCATCTCTGGCA TGCCCTCTAGAGGGAATAAGATATCTATACTGGCATCTGAGGTAGCTTGA
AA sequence Show only first row Show all	>Lus10013553 pacid=23168723 polypeptide=Lus10013553 locus=Lus10013553.g ID=Lus10013553.BGIv1.0 annot-version=v1.0 MGAVCAGGVKKDVNAKPAQVKRFSDKLAKPQKSLAKELDNSSGAKMNKNKNKNKKQTTTMQPEKHYSGELLLSFSRELKPSKPAAEGPPAKVTHKTSFLG KAGTMGLEKTLEVLDTLGSSMSNLNARSGFISGMPSRGNKISILASEVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	0	1
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	2.0	0.7750
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	2.0	0.7738
AT1G68710			ATPase E1-E2 type family prote...		Lus10034403 [exp]	5.2	0.7663
AT1G30755			Protein of unknown function (D...		Lus10017259 [exp]	6.6	0.7582
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	6.9	0.7360
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10033125 [exp]	13.7	0.6532
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Lus10013804 [exp]	13.9	0.7036
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10032517 [exp]	15.7	0.7294
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	17.6	0.7391
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	20.1	0.7326

Compare expression of checked genes

Lus10013553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.