Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30755 367 / 3e-121 Protein of unknown function (DUF668) (.1) AT1G34320 363 / 5e-119 Protein of unknown function (DUF668) (.1) AT5G08660 296 / 3e-93 Protein of unknown function (DUF668) (.1) AT5G51670 69 / 2e-12 Protein of unknown function (DUF668) (.1) AT5G04550 59 / 7e-09 Protein of unknown function (DUF668) (.1) AT3G23160 56 / 3e-08 Protein of unknown function (DUF668) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017260 [exp] 788 / 0 AT1G30755 567 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017259 [exp] 536 / 0 AT1G30755 484 / 3e-166 Protein of unknown function (DUF668) (.1) Lus10006049 [exp] 363 / 5e-119 AT1G34320 919 / 0.0 Protein of unknown function (DUF668) (.1) Lus10028708 [exp] 293 / 2e-92 AT1G34320 827 / 0.0 Protein of unknown function (DUF668) (.1) Lus10017136 [exp] 273 / 9e-85 AT1G34320 570 / 0.0 Protein of unknown function (DUF668) (.1) Lus10018317 [exp] 268 / 3e-82 AT1G34320 559 / 0.0 Protein of unknown function (DUF668) (.1) Lus10002840 [exp] 62 / 6e-10 AT5G04550 308 / 8e-98 Protein of unknown function (DUF668) (.1) Lus10022201 [exp] 61 / 9e-10 AT3G23160 657 / 0.0 Protein of unknown function (DUF668) (.1) Lus10008987 [exp] 60 / 2e-09 AT5G04550 566 / 0.0 Protein of unknown function (DUF668) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G021400 [exp] 507 / 9e-176 AT1G30755 568 / 0.0 Protein of unknown function (DUF668) (.1) Potri.005G240300 [exp] 494 / 1e-170 AT1G30755 588 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G085900 [exp] 388 / 6e-129 AT1G34320 908 / 0.0 Protein of unknown function (DUF668) (.1) Potri.013G115300 [exp] 385 / 6e-128 AT1G34320 889 / 0.0 Protein of unknown function (DUF668) (.1) Potri.019G001500 [exp] 314 / 3e-100 AT1G34320 591 / 0.0 Protein of unknown function (DUF668) (.1) Potri.001G305800 [exp] 293 / 5e-92 AT1G34320 593 / 0.0 Protein of unknown function (DUF668) (.1) Potri.010G233700 [exp] 64 / 9e-11 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.012G129900 [exp] 63 / 1e-10 AT5G51670 466 / 6e-162 Protein of unknown function (DUF668) (.1) Potri.008G026800 [exp] 62 / 5e-10 AT5G04550 677 / 0.0 Protein of unknown function (DUF668) (.1) Potri.006G117000 [exp] 58 / 1e-08 AT5G04550 356 / 8e-116 Protein of unknown function (DUF668) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05003 [flax] [poplar] DUF668 Protein of unknown function (DUF668)
Representative CDS sequence Show only first row Show all	>Lus10013554 pacid=23168722 polypeptide=Lus10013554 locus=Lus10013554.g ID=Lus10013554.BGIv1.0 annot-version=v1.0 ATGAAAGAGTTGCTAGCTATTGCTGCATCTGACAAAAGGGAAGAATTTGACGTCTTTTCACATGAAGTGATTCGATTTGGAGATCTATGTAAAGACCCCC AATGGCATAATTTGGGAAGATACTTTCCAAGATTAGATGCAGAGCTTTCAGCTGATAGACAATTGAGAGAAGAAGCTGAGATGACTGTGCATGAGTTGAC GACGTTGGTACAGCATACTTCTGAACTATATCACGAATTGCATTCATTGGACAGATTTGAGCAAGATTATCAGCGAAAGGTGGAGGAGCTGCAGTCCTTA CACCTTCCTCAGAAAGGAGAGAGCCTATCAATTTTACTAAGTGAGTTGAAAGAACAACGAAAGCTTGTCCGGAGCTTGAAAAAGAGATCTCTTTGGTCTA AAAGTTTAGAGGAGATCATGGAGAAACTTGTTGATATTGTCACCTATTTGCACCAAGCTATCCTGGAAGCATTTGGAAATAGTGGAGTAACTGTGGCTGT TGATGAGCCAGCCAACCATCAAAGGCTTGGAAAAGCTGGTCTAGCATTGCATTATGCTAACATGATCACCCAGATAGATAACATTGCATCTCGTCCGACC AGTCTTCCTCCCAATACAAGGGATTCATTATACCGTGGGTTGCCGCCCAGTGTCAAAACATCTCTACGTTCCAGATTGCAGACATTTGACGACAAGGAAG AGCTTACCATAACTCAAGTAAAAGCTGAAATGGAGAAGACTCTTCAGTGGATTGTACCTGTTGCCGCCAACACAACCAAGTATGCCTCTATTTCTTATAG TTCTTCCATCGCAACAAATTTGCTATCACCTTCCACTCACGTTAACTGCTGTTATGATTTGGCAAGCAGAGCACACCAAGGTTTCGGCTGGGTTGGAGAA TGGGCTAGTAATACTGGAAGCGACTATGGGAAGACTAACACAGCCGCCCAAGGAAACCTGATCCGACTGCAAACGCTCTACCACGCGGATAAGGAAAAAA CCGACCAACACATCTTGGAAACAGTGGCATTGCTTCACCGGCTGATCAGTTTAGTAAGACAGCGGGACAATGGCCTACGTACAGGAGGCTTGGTATTGAA GTCTGCAACTTATAGAGGACAAGATCTTCACTCAAAGATGCAGCAGCAGCAGCAACACGTGTCACTAAACCAAAGCAGGAAGCCACACGTTCCTCGACTG TCGGAAGAGGACAGAGACTTGTTAAACAAGGTGAGCCGTAGAAGATCGATTCCTGGGATAAGCAAAAGTCAGGAATTTAATAAGAGCGGAAGAAGATGGG CATCGTTGAGTAGGAATAAGAGCACCGGAACGTCTCCTGCTAAAGAAATGGGGAGGAGGAGGAAAATGGTGCACCAACCCAGAGGGAACCTATTGGACAT TTTGGATGGCTTGCATTCCATCGTGTAA
AA sequence Show only first row Show all	>Lus10013554 pacid=23168722 polypeptide=Lus10013554 locus=Lus10013554.g ID=Lus10013554.BGIv1.0 annot-version=v1.0 MKELLAIAASDKREEFDVFSHEVIRFGDLCKDPQWHNLGRYFPRLDAELSADRQLREEAEMTVHELTTLVQHTSELYHELHSLDRFEQDYQRKVEELQSL HLPQKGESLSILLSELKEQRKLVRSLKKRSLWSKSLEEIMEKLVDIVTYLHQAILEAFGNSGVTVAVDEPANHQRLGKAGLALHYANMITQIDNIASRPT SLPPNTRDSLYRGLPPSVKTSLRSRLQTFDDKEELTITQVKAEMEKTLQWIVPVAANTTKYASISYSSSIATNLLSPSTHVNCCYDLASRAHQGFGWVGE WASNTGSDYGKTNTAAQGNLIRLQTLYHADKEKTDQHILETVALLHRLISLVRQRDNGLRTGGLVLKSATYRGQDLHSKMQQQQQHVSLNQSRKPHVPRL SEEDRDLLNKVSRRRSIPGISKSQEFNKSGRRWASLSRNKSTGTSPAKEMGRRRKMVHQPRGNLLDILDGLHSIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	0	1
AT4G34150			Calcium-dependent lipid-bindin...		Lus10014088 [exp]	2.4	0.9387
AT1G30700			FAD-binding Berberine family p...		Lus10023375 [exp]	3.9	0.9362
AT4G28400			Protein phosphatase 2C family ...		Lus10018618 [exp]	4.5	0.9279
AT1G30755			Protein of unknown function (D...		Lus10017260 [exp]	6.5	0.9147
AT2G41835	C2H2ZnF		zinc finger (C2H2 type, AN1-li...		Lus10007540 [exp]	6.8	0.9216
AT5G58950			Protein kinase superfamily pro...		Lus10025442 [exp]	7.5	0.9258
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10003387 [exp]	10.2	0.9229
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	11.1	0.9199
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	11.2	0.9323
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024061 [exp]	11.3	0.9196

Compare expression of checked genes

Lus10013554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.