Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18110 277 / 7e-95 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT1G30230 270 / 7e-92 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1.2) AT5G19510 189 / 2e-60 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) AT5G12110 184 / 2e-58 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017261 [exp] 350 / 1e-121 AT2G18110 308 / 3e-105 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10037618 [exp] 320 / 1e-111 AT2G18110 319 / 2e-111 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Lus10036101 [exp] 155 / 3e-47 AT5G12110 296 / 1e-102 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1) Lus10026784 [exp] 155 / 3e-47 AT5G12110 297 / 6e-103 Glutathione S-transferase, C-terminal-like;Translation elongation factor EF1B/ribosomal protein S6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G096400 [exp] 273 / 2e-93 AT2G18110 275 / 4e-94 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.015G094200 [exp] 271 / 2e-92 AT2G18110 299 / 1e-103 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.009G018600 [exp] 194 / 4e-62 AT2G18110 158 / 3e-48 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1) Potri.001G224700 [exp] 191 / 3e-61 AT2G18110 153 / 3e-46 Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00736 [flax] [poplar] EF1_GNE EF-1 guanine nucleotide exchange domain
Representative CDS sequence Show only first row Show all	>Lus10013555 pacid=23168730 polypeptide=Lus10013555 locus=Lus10013555.g ID=Lus10013555.BGIv1.0 annot-version=v1.0 ATGGCGATTGCATTCCAAGGTCTTAACACCCCAGCTGGCCTGAAGAAGCTCGATGAGTACCTTCTCACTCGCAGTTACATCACTGGGTATCAAGCTTCAA AAGACGATGTGATTGTCTTCTCAGCAATCCCTAGTCTCCCACCATCTGATTTGGTGAATGTTGCTAGGTGGTTCAAACACATCGACGCTCTTCTAAGGAT GTCTGGTCTTTCTGGAGAAGGATCTGGAGTTTCTATCGAGGGATTTGCTCCTGTTGCAACTCCTCCTACTGGTGACACAAAGGCCGCTGCTGCTGCCGAG GATGACGATGACGATGATGTGGACCTGTTTGGTGAAGAGACTGAGGAGGAAAAGAAGGCTGCAGAAGAGCGTGCAGCTTCTGTTAAGGCTTCTTCCAAGA AGAAAGAATCTGGAAAGTCGTCTGTTTTGATGGATGTTAAGCCATGGGATGATGAAACGGACATGAAAAAGCTGGAGGAAGCAGTCAGAGGCGTTGAGAT GGAAGGACTTTTCTGGGGAGCATCTAAGCTGGTTGCAGTTGGATACGGTATCAAGAAGCTGCAGATCATGCTTACCATTGTGGACGACCTAGTGTCGGTG GACACCCTCATTGAAGAGCGACTGACCGAAGAGCCGATCAATGAGTATGTCCAGAGCTGTGACATTGTGGCCTTCAACAAGATATGTGAGTCCTCGTAA
AA sequence Show only first row Show all	>Lus10013555 pacid=23168730 polypeptide=Lus10013555 locus=Lus10013555.g ID=Lus10013555.BGIv1.0 annot-version=v1.0 MAIAFQGLNTPAGLKKLDEYLLTRSYITGYQASKDDVIVFSAIPSLPPSDLVNVARWFKHIDALLRMSGLSGEGSGVSIEGFAPVATPPTGDTKAAAAAE DDDDDDVDLFGEETEEEKKAAEERAASVKASSKKKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMEGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSV DTLIEERLTEEPINEYVQSCDIVAFNKICESS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18110			Translation elongation factor...		Lus10013555 [exp]	0	1
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10023172 [exp]	3.7	0.8293
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	5.2	0.7815
AT4G18100			Ribosomal protein L32e (.1)		Lus10031699 [exp]	7.1	0.8086
AT3G11510			Ribosomal protein S11 family p...		Lus10014220 [exp]	7.5	0.8092
AT4G31460			Ribosomal L28 family (.1)		Lus10003683 [exp]	9.2	0.7475
AT3G13230			RNA-binding KH domain-containi...		Lus10008345 [exp]	11.2	0.7594
AT3G22660			rRNA processing protein-relate...		Lus10031120 [exp]	11.3	0.8079
AT5G28060			Ribosomal protein S24e family ...		Lus10004123 [exp]	14.1	0.8061
AT5G02960			Ribosomal protein S12/S23 fami...		Lus10019910 [exp]	14.7	0.7968
AT3G05560			Ribosomal L22e protein family ...		Lus10006509 [exp]	16.7	0.7930

Compare expression of checked genes

Lus10013555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.