Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75800 178 / 8e-54 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 161 / 1e-47 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36010 154 / 7e-45 Pathogenesis-related thaumatin superfamily protein (.1.2) AT2G17860 145 / 5e-42 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38670 146 / 6e-42 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G24180 139 / 3e-39 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 139 / 9e-39 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G36000 134 / 2e-38 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 129 / 5e-36 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 124 / 6e-34 PR-5, PR5 pathogenesis-related gene 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017265 [exp] 280 / 1e-93 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 207 / 4e-65 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 204 / 5e-64 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 150 / 2e-43 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 149 / 5e-43 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 144 / 8e-41 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 140 / 3e-39 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041108 [exp] 135 / 5e-39 AT4G38670 213 / 5e-70 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Lus10032726 [exp] 136 / 2e-38 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020500 [exp] 206 / 1e-64 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G240900 [exp] 201 / 1e-62 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 158 / 2e-46 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 143 / 3e-40 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 139 / 4e-39 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 139 / 7e-39 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 139 / 1e-38 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 137 / 5e-38 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132200 [exp] 136 / 6e-38 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.004G014574 [exp] 132 / 1e-36 AT1G75800 294 / 8e-100 Pathogenesis-related thaumatin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10013560 pacid=23168737 polypeptide=Lus10013560 locus=Lus10013560.g ID=Lus10013560.BGIv1.0 annot-version=v1.0 ATGGAGGCCGAAAGGTTGAGAGTCCGTCCAGACCAACCATCGATCAGTTTGGGTGGAGGGAAAGGCAAATCCAACTACAAGCTTATTTCATCTGCCAATC CGCCGTCGTCGTATTATCCACGACTTTCACAATCACCAACGAGTGCGACTACACGGTGTGGCCGGGCATTCTCTCCAGCGCAGACGCTCCACCGCTCTCC ACAACAGGTTTCCCTCTCCAGAAAGGCGAGTCCCGATCCATATCCCCTCCGCCTTCCTGGGGCGGCCGCCTCTGGGGTCGGACTCACTGCTCCCAGGACT CCGCCGACGGTAAATTCTCATGTCTCACCGGCGATTTTGGCTAGCGGCGGTTCCGGCCAGAACTGCTCCAGCACTGGCTGCGCTGTGGATCTGAACGGCG CGTGTCCTTCCGACCTCAAGGTTACCAGCGCGGCCGGCGAGGGCGTGGCTTGCAAGAGCGCGTGCGAAGCGTTTCAGAAGCCGGAGTACTGCTGCAATGG AGCTTACGCGACTCCCGATACGTGTAAGCCGTCTCCTTACTCGATGGCCTTCAAGAACGCCTGCCCACGCGCTTATAGCTACGCGTACGATGATAAGACC AGCACCTTTACCTGCAGTTCCGCAGATTACGCCATCACCTTCTGCCCCACTCCCAACAGCCCCACTCCCAACAGCAGTCAGAAGGCGTCCCAGGAGCCGA ACCAAACCCAGCATACCAATCCAAACGGAAACGGAGGCCGAAACGACGGCAGAGGGAACGGTTCGCCGTTTGTTGACGGGACGATGGTATACGAAGGAAG CGCATTTGACGCGAGCCGTGGGATGTCGACAACGTGTAGCCACGTGATGGGAACAGTGAGCATCACATTAGCCATTTGGCGGTTGATGCAGTTTTTTTCA TGA
AA sequence Show only first row Show all	>Lus10013560 pacid=23168737 polypeptide=Lus10013560 locus=Lus10013560.g ID=Lus10013560.BGIv1.0 annot-version=v1.0 MEAERLRVRPDQPSISLGGGKGKSNYKLISSANPPSSYYPRLSQSPTSATTRCGRAFSPAQTLHRSPQQVSLSRKASPDPYPLRLPGAAASGVGLTAPRT PPTVNSHVSPAILASGGSGQNCSSTGCAVDLNGACPSDLKVTSAAGEGVACKSACEAFQKPEYCCNGAYATPDTCKPSPYSMAFKNACPRAYSYAYDDKT STFTCSSADYAITFCPTPNSPTPNSSQKASQEPNQTQHTNPNGNGGRNDGRGNGSPFVDGTMVYEGSAFDASRGMSTTCSHVMGTVSITLAIWRLMQFFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75800			Pathogenesis-related thaumatin...		Lus10013560 [exp]	0	1
AT1G75800			Pathogenesis-related thaumatin...		Lus10017265 [exp]	1.0	0.8735
AT2G18630			Protein of unknown function (D...		Lus10040334 [exp]	7.1	0.7671
AT1G18210			Calcium-binding EF-hand family...		Lus10009059 [exp]	9.4	0.7800
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10018819 [exp]	18.7	0.7435
AT5G47910		ATRBOHD, RBOHD	respiratory burst oxidase homo...		Lus10043017 [exp]	23.5	0.7283
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	24.4	0.7624
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10037890 [exp]	25.0	0.6996
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	25.5	0.7630
AT1G32928			unknown protein		Lus10033221 [exp]	25.7	0.7445
AT1G18210			Calcium-binding EF-hand family...		Lus10031345 [exp]	26.5	0.7660

Compare expression of checked genes

Lus10013560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.