Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24180 325 / 3e-112 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT4G38660 322 / 2e-109 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 300 / 3e-101 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 289 / 8e-98 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 289 / 3e-97 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G20030 288 / 2e-96 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 276 / 1e-92 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT1G19320 267 / 2e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75040 259 / 3e-86 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75050 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017266 [exp] 536 / 0 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10041899 [exp] 331 / 4e-113 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 326 / 2e-111 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 307 / 1e-104 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 296 / 3e-100 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 291 / 2e-97 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 289 / 5e-97 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10034534 [exp] 283 / 3e-94 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 278 / 1e-92 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241000 [exp] 413 / 1e-145 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.002G020400 [exp] 402 / 2e-141 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G112600 [exp] 329 / 1e-112 AT4G38660 348 / 2e-119 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.004G173200 [exp] 325 / 7e-111 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.009G132500 [exp] 323 / 7e-110 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 297 / 4e-100 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 295 / 1e-99 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 295 / 4e-99 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132200 [exp] 274 / 5e-91 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.015G000800 [exp] 257 / 9e-85 AT5G24620 351 / 4e-120 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10013561 pacid=23168732 polypeptide=Lus10013561 locus=Lus10013561.g ID=Lus10013561.BGIv1.0 annot-version=v1.0 ATGGATCCATCATTATCGCTAGTACCTCATCTCTTCCTCTCCTTCACTATTGCCCTTTCTTTTACGGCTACACAAATCTCGGCAACTACATTCACAGTCG TCAACAGGTGTCAATCCACTATTTGGCCCGGAATACTTGCTAATGCCGGAACCCAGCCGTTAGACAGCACCGGGTTCGAGCTTCCCTCTGGCGAATCCCG GACCTTCCAAGCTCCACCGAGTTGGTCTGGTCGATTCTGGGGTCGAACCGGATGCCAGTTTGACCCGTCCACTAACCAAGGCACTTGCCTCACTGGCGAT TGCGGCTCCAATCAAATTGAATGCAACGGTCAGAACGCCAAGCCCCCCGCCACGCTAGCCGAGTTCACGGTGGTCCCGGACGGCGGCCAGGACTTCTACG ATGTCAGCCTGGTTGACGGCTACAACTTGCCCATGATCGTCGAGCCCAATGGCGGCTCAGGTAGTTGTTTGACCACGGGTTGCATTACGGATTTAAACCG ACGGTGCCCCGACGAGCTGAAGGTGGACGGCGCGTGTAAGAGCGCGTGCGAAGCGTTTGGGACGCCCGAGTATTGCTGCAGCGGCGGGTCCGGGACTCCC GACACGTGTAAGCCGTCGGTTTATTCGGAGATGTTCAAGTCGGCTTGTCCCAGAGCTTACAGCTACGCTTATGATGACGCCAGCAGTACTTTTACCTGCA GTGGAGCTGATTATGTTATCACATTCTGCCCTTCAGTTGCGAGCCAGAAATCTGCAAAAGACATGTCATCGGCAATAACGGCGGAAACCGGGAATGGTTC TAATTCTTCGTTGGGATCAGGAGATGGGCCTTTCGGGATCAACACTTCCTGGTTGCCAAATTTCGTAACTGGGAACTCTAGTTCGCCACTTCCTTCATCC TCTTGGTTTCGGACATTTTCGTTATTATCTGCAATTATTTCATTCTTTTTGCTCTTGTAG
AA sequence Show only first row Show all	>Lus10013561 pacid=23168732 polypeptide=Lus10013561 locus=Lus10013561.g ID=Lus10013561.BGIv1.0 annot-version=v1.0 MDPSLSLVPHLFLSFTIALSFTATQISATTFTVVNRCQSTIWPGILANAGTQPLDSTGFELPSGESRTFQAPPSWSGRFWGRTGCQFDPSTNQGTCLTGD CGSNQIECNGQNAKPPATLAEFTVVPDGGQDFYDVSLVDGYNLPMIVEPNGGSGSCLTTGCITDLNRRCPDELKVDGACKSACEAFGTPEYCCSGGSGTP DTCKPSVYSEMFKSACPRAYSYAYDDASSTFTCSGADYVITFCPSVASQKSAKDMSSAITAETGNGSNSSLGSGDGPFGINTSWLPNFVTGNSSSPLPSS SWFRTFSLLSAIISFFLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38660			Pathogenesis-related thaumatin...		Lus10013561 [exp]	0	1
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	4.0	0.8145
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Lus10017266 [exp]	4.2	0.8574
AT4G12010			Disease resistance protein (TI...		Lus10009107 [exp]	4.4	0.7173
AT5G08350			GRAM domain-containing protein...		Lus10040999 [exp]	5.8	0.8369
AT1G49230			RING/U-box superfamily protein...		Lus10005815 [exp]	5.9	0.8095
AT3G49760	bZIP	ATBZIP5	basic leucine-zipper 5 (.1)		Lus10011722 [exp]	6.2	0.8182
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	10.4	0.8049
AT4G18340			Glycosyl hydrolase superfamily...		Lus10023309 [exp]	11.2	0.7739
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10019604 [exp]	11.2	0.7462
					Lus10039390 [exp]	11.4	0.7703

Compare expression of checked genes

Lus10013561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.