Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75820 1246 / 0 ATCLV1, FLO5, FAS3, CLV1 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 965 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 932 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G20270 834 / 0 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) AT5G61480 653 / 0 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 608 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G08590 606 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G28440 587 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 564 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 559 / 0 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017267 [exp] 1811 / 0 AT1G75820 1305 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 936 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10019248 [exp] 934 / 0 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10011576 [exp] 881 / 0 AT5G65700 1330 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10036242 [exp] 842 / 0 AT4G20270 1248 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Lus10037358 [exp] 815 / 0 AT5G65700 1027 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10035783 [exp] 704 / 0 AT5G65700 857 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10038930 [exp] 651 / 0 AT5G61480 1248 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 650 / 0 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G241500 [exp] 1361 / 0 AT1G75820 1268 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G019900 [exp] 1327 / 0 AT1G75820 1226 / 0.0 FLOWER DEVELOPMENT 5, FASCIATA 3, CLAVATA 1, Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G009200 [exp] 948 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.001G073600 [exp] 907 / 0 AT4G20270 1279 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G157300 [exp] 894 / 0 AT4G20270 1285 / 0.0 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1) Potri.004G223900 [exp] 824 / 0 AT5G65700 992 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.003G107600 [exp] 688 / 0 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 670 / 0 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 650 / 0 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G256500 [exp] 647 / 0 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013562 pacid=23168761 polypeptide=Lus10013562 locus=Lus10013562.g ID=Lus10013562.BGIv1.0 annot-version=v1.0 ATGAGGGTTTCACTATTCTCCATTGTCTTTCATCTTCTCCTCCTATCCTCTGCTTCCAATGGCAGCGACCTCCAAGTACTTTTGAAGCTCAAATCCGCCA TGACCGGACCCAAAGGCACCGGCCTGGAGGACTGGCAACAGCCTACACCCTTCTCTCCTTCCGCTCATTGCTCCTTCTCCGGGGTTACCTGCGACGAGGA CTCCCGCGTAGTATCTCTCAACGTCTCATCTCGCCGCCTGTTTGGCTGCATCCCGCCGGAGATTGGGCTGTTGGATCGGCTCGTCAACCTCACCATTCCT TCAGATAACCTCACCGGCGGACTTCCTCTTGAGATGTCCAAGCTAGCTTCTCTCAGGATGCTCAACGTCTCCAACAACAATGTCACCGGGAATTTCCCCG GAGAGATTGTTCTAGGAATGCCTCTGCTCGAGATCCTTGACGTTTACAACAACAATTTCTCAGGTCCCTTGCCGGTGGAGGTCTCCAAGTTGAAGAATCT AAAGCACCTCCACCTCGGTGGGAACTATTTCTCCGGGACGATACCAGAAGCCTACTCCGAGATTGAGAGCTTGGACTATTTAGGACTCAACGGCAACGGC CTCTCTGGTAAGGTTCCGGCGATTTTGGCGAAGCTTAGTAATCTTAAGAGCTTGTACTTGGGGTATTTCAACTTATACGAAGGCGGAATCCCGCCGCAGT TTGGGCTGTTGAGTAGTCTGGAGGTATTGGACATGGCAAGCTGCAACCTTAGCGGCGAAATTCCCAGGACCTTGAGTCGATTGACGCAGCTCAATAGTCT GTTCCTCCAAATGAACCATTTATCAGGTCACATTCCCCCTGATTTCTCTGCTTTGGTTGGTTTGAAGTCTCTGGATCTTTCCCTCAATGAGCTCACAGGT GAGATTCCTTCTGGATTTTCTTCCTTGACCAAAATCACTCTCATTAACGCCTTTAAGAACAACCTGTATGGTCCCATCCCGGAGTTCATCGGTGACTTCC CCGATCTTGAGGTTCTTCAACTTTGGGGAAATAATTTCACGGTCCAACTCCCGGCGAGGCTAGGCCAAAGTGGGAAGCTGAAGCTCCTCGACGTTTCTTT CAATCATCTCACTGGCTCTATCCCTAAGGAATTATGCAAGGGTGGGAAATTAGAGTCATTAATTCTCATGAACAATTTCTTCATTGGATCGCTTCCAGAC GAGCTCGGCCACTGCAAATCATTGACGAAATTCCGAGTTGCGAATAACCTGCTCAGCGGGCCGATTCCCGCCGGTGTCTTCAACCTGCCGGCATCCACTA TTGTGGAATTGAGCAACAACTACTTCTCTGGCAAACTCCCGTCGGAGATGTCTTCGCCGCAGCTCGGCCTTCTCACTGTTTCCAACAACCGGATTGAAGG TGAAATCCCTCCAGCTATCGGCAACTTAGCTAACCTACAGATATTATCCCTTGACACCAACAGATTCTCCAGCGAAATTCCGGCTGAGGTATTCAATCTC AGGCGTCTTTCAGTAATCAATATCAGCGCCAATAACCTGACAGGCGAAATCCCGAACTCAATCTCTCATTCCTCGTCGTTAACATCGGCGGATTTCAGTC GTAACCAACTCACCGGCGAGATCCCGAAAGCCGTTACAGAGCTCAAGGTTTTAAGCATTCTCAATCTCTCCCGTAATGATCTCACCGGAAAAATTTTAGG GGATATCAGAAACATGACAAGCCTCACTAAGCTGGATCTATCTTACAACAATCTGCGAGGCAGCATCCCTTCCGGCGGCCAGTTTCTCGTGTTTGGCGAT AGTGCCTTCACAGGGAACCCTAATCTCTGTCCCTCGAGGGAAGTCTCCTGCCCGTCTTTCTCCGATTCCGCCGAATCATCCAACCGCCATAAGCCGTCGT TTCCATCATCCGATCTTATAATCACTGTGGTCCTGGTTCTCTCCGTCTTGGTAGCATCCGTGGTCGCATTCTTCATGAGGAAGAAAAACCGCCGCAATTC ACGGGCGTGGAAGCTCACGGCGTTCCAGAAGCTGGATTTCAAAGCAGAGGACGTCGTAGAGTGCCTGAAAGAAGAGAACATAATAGGTAAAGGCGGCGCC GGAACAGTATACCGTGGATCGATGCCAGATGGCGTTGACGTGGCAATCAAGCGCCTGGTCGGCGCTCGCGGGACGGGGAGGAGCGACCACGGGTTCTCGG CGGAGATTCAGACGCTGGGGAAAATCCGGCACAGGAACATCGTCCGGTTGCTGGGACACGTTTCGAACAAGGACACGAACTTGCTGCTGTACGAATACAT GCCGAACGGGAGCCTGGGTGAGTTGCTCCATGGGTCGAAAGGAGGGCAGTATTTGCAGTGGCAGACAAGGTACAGGATCGCTGTGGAAGCTGCCAAGGGA TTGTGCTATCTTCACCATGACTGTTCTCCATTGATCATCCATCGTGATGTGAAATCCAACAACATATTGCTTGATTCCGATTTCGAGGCTCACGTTGCCG ATTTCGGACTCGCAAAGTTTTTACAGGATGCTGGAGCTTCGGAGTGCATGTCCTCCATCGCAGGCTCCTACGGGTACATCGCACCCGAATATGCATACAC GTTAAAGGTGGACGAGAAGAGCGACGTGTACAGCTTCGGGGTGGTGTTGCTGGAGTTAATAGCGGGGAGGAAGCCGGTGGGGGAATTCGGAGATGGGGTG GACATAGTAAGGTGGGTGAGGAAGACGACGACAGAGCTTCCTCAGCCGTCGACGGAGGCGGGTTCGGTGTTGGCAGTAATTGATCCTAGGTTGAGTGGGT ACGCAGTGACAGGTGTCATCCATCTGTTCAAGATTGCTATGTTGTGCGTTGAGGATGAGAGCTCGGCTAGGCCTACGATGAGGGAAGTGGTTGACATGTT GACTAATCATTCCCCGCAGTCTACTCTTCCGGACTTGGTGGCTCTTTGA
AA sequence Show only first row Show all	>Lus10013562 pacid=23168761 polypeptide=Lus10013562 locus=Lus10013562.g ID=Lus10013562.BGIv1.0 annot-version=v1.0 MRVSLFSIVFHLLLLSSASNGSDLQVLLKLKSAMTGPKGTGLEDWQQPTPFSPSAHCSFSGVTCDEDSRVVSLNVSSRRLFGCIPPEIGLLDRLVNLTIP SDNLTGGLPLEMSKLASLRMLNVSNNNVTGNFPGEIVLGMPLLEILDVYNNNFSGPLPVEVSKLKNLKHLHLGGNYFSGTIPEAYSEIESLDYLGLNGNG LSGKVPAILAKLSNLKSLYLGYFNLYEGGIPPQFGLLSSLEVLDMASCNLSGEIPRTLSRLTQLNSLFLQMNHLSGHIPPDFSALVGLKSLDLSLNELTG EIPSGFSSLTKITLINAFKNNLYGPIPEFIGDFPDLEVLQLWGNNFTVQLPARLGQSGKLKLLDVSFNHLTGSIPKELCKGGKLESLILMNNFFIGSLPD ELGHCKSLTKFRVANNLLSGPIPAGVFNLPASTIVELSNNYFSGKLPSEMSSPQLGLLTVSNNRIEGEIPPAIGNLANLQILSLDTNRFSSEIPAEVFNL RRLSVINISANNLTGEIPNSISHSSSLTSADFSRNQLTGEIPKAVTELKVLSILNLSRNDLTGKILGDIRNMTSLTKLDLSYNNLRGSIPSGGQFLVFGD SAFTGNPNLCPSREVSCPSFSDSAESSNRHKPSFPSSDLIITVVLVLSVLVASVVAFFMRKKNRRNSRAWKLTAFQKLDFKAEDVVECLKEENIIGKGGA GTVYRGSMPDGVDVAIKRLVGARGTGRSDHGFSAEIQTLGKIRHRNIVRLLGHVSNKDTNLLLYEYMPNGSLGELLHGSKGGQYLQWQTRYRIAVEAAKG LCYLHHDCSPLIIHRDVKSNNILLDSDFEAHVADFGLAKFLQDAGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKPVGEFGDGV DIVRWVRKTTTELPQPSTEAGSVLAVIDPRLSGYAVTGVIHLFKIAMLCVEDESSARPTMREVVDMLTNHSPQSTLPDLVAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	0	1
					Lus10024691 [exp]	1.0	0.8902
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	1.4	0.8761
AT2G26520			unknown protein		Lus10032762 [exp]	5.7	0.8557
AT3G13275			unknown protein		Lus10020466 [exp]	5.9	0.8525
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10031505 [exp]	6.9	0.8242
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	7.9	0.8278
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10033333 [exp]	10.0	0.7861
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	11.5	0.8075
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	12.6	0.8038
AT4G38380			MATE efflux family protein (.1...		Lus10014441 [exp]	13.4	0.7617

Compare expression of checked genes

Lus10013562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.