Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20080 823 / 0 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G20990 791 / 0 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT5G04220 546 / 0 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21010 346 / 1e-116 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 251 / 6e-76 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G11100 231 / 3e-68 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 210 / 5e-61 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G21040 139 / 1e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 102 / 8e-23 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT3G61030 96 / 7e-21 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017268 [exp] 1040 / 0 AT1G20080 868 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10019782 [exp] 824 / 0 AT2G20990 825 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10014127 [exp] 813 / 0 AT2G20990 821 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10005069 [exp] 769 / 0 AT2G20990 766 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10027842 [exp] 693 / 0 AT2G20990 695 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Lus10037993 [exp] 614 / 0 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10040414 [exp] 592 / 0 AT5G04220 667 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10009226 [exp] 566 / 0 AT5G04220 603 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10026515 [exp] 553 / 0 AT5G04220 615 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G134200 [exp] 877 / 0 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.002G019800 [exp] 872 / 0 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G174600 [exp] 866 / 0 AT2G20990 854 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 858 / 0 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G038300 [exp] 639 / 0 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 632 / 0 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.018G124000 [exp] 251 / 5e-76 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 249 / 2e-75 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.018G025000 [exp] 226 / 1e-66 AT5G11100 824 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 202 / 3e-58 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10013563 pacid=23168707 polypeptide=Lus10013563 locus=Lus10013563.g ID=Lus10013563.BGIv1.0 annot-version=v1.0 ATGGGTATTCTGAGTACGTTGATGGGTTTCATTGGATTCGGATTCGGAACTTCAATCGGCTGTATTGCTGGCTACTACATGTTCATCTACTTCCAGCCAA CTGATGTCAAGATCTTGAACTTGTGTCGTTTGAGAATTCTTGATGTATGGGGAAGGGCCATTTTGGATTCGCAGGATCCAGCGGTTCGTCCTCTGGTTGA GCAAGACTCGGAGACTTTGCAACGAATGTTTCCTGAAATACCCTTGTGGGTGAAAAATCCAGACTATGACCGCGTTGACTGGCTTAACAAGTTCATTGCA CACATGTGGCCTTACTTGGACAAGGCAATTTGTAAAACTGCAAAGGAGATAGCAAAGCCAATTATCGCTGAGCAAATTCCCAAGTATAAAATTGATTCAG TTGAATTCGAAATGCTTACTTTAGGCACCTTACCGCCTACCTTTCAGGGAATGAAAGTTTATGTCACCGATGAGAAAGAGTTGATAATGGAGCCTGTACT GAAGTGGGCAGGAAATCCTAACATCCTCGTTGGAGTTAAAGCATTTGGCTTGAAAGCAACAGTCCAGGTGATTGATTTACAAGTATTTGCTGCTCCACGA GTCACACTTAAACCCTTGGTTCCTACCTTCCCTTGTTTCGCCAATATTCACGTTTCTCTAATGGAAAAGCCACATGTGGACTTCGGGCTGAAATTGCTTG GAGCAGACGTTATGTCCATTCCTGGAGTTTATAGATTAGTTCAGGATATTGTCAAAGAGCAAGTTGCAAAGATGTACTTATGGCCCAAAACCCTGACTGT ACCAGTTTTGGATCCTTCAAAAGCCATGAGGAAACCTGTTGGGATTCTTACAGTGAAGGTTGTACGTGCAATGAAACTTAAAAAGAAAGATCTGTTGGGG GCATCAGACCCTTATGTTAAGCTGAAACTTACTGAAGATAAGCTGCCTTCAAAGAAAACTACGGTCAAACACAAGAACTTAAATCCTGAATGGGATGAGG AGTTTCATCTGGTTATTAAAGACCCAGAATCTCAAGCTTTGGAGCTCATGGTGTATGATTGGGAGCAGGTTGGTAAGCATGACAAAATGGGTATGAATGT TGTTCCATTGAAAGATCTTACACCGGAAGAGGCAAAAGTCATGACACTTGAACTGTTGAAAAATATGGACCCAAATGATGTTCAGAATGAGAAATCGCGT GGTCAGCTTGTCGTGGAACTGTTGTACAAACCATTCAAGGAAGATGAGATGCCTAATGCAGTTGAGGAAGCGAATGGGATTGAAAAAGCTCCAGAAGGAA CACCTTCTGGTGGGGGTTTGCTTGTCGTCATTGTACATGAAGCTCAAGATGTTGAAGGGAAAAACCATACGAACCCTTACGTTAAAATTACTTTCAGGGG AGAGGAGAAGAAAACTAAGCATGTGAAGAAAAATAGAGATCCAAGATGGGGAGAGGAATTTCAATTTATGCTGGAGGAACCACCTGTCAATGACAAGCTT CACTTGGAAGTTAATAGTGTCTCCTCAAGAATTGGTCTGATACATCCTAAGGAAGTTCTTGGTTACGTGACCATAAACCTGGCAGATGTGGTGTCCAACA AGCGAATCAACGAGAAGTACAATCTCATCGACTCAAGGCATGGAAAGATCCAAGTTGAGCTGCAATGGCGAACATCGTCATAA
AA sequence Show only first row Show all	>Lus10013563 pacid=23168707 polypeptide=Lus10013563 locus=Lus10013563.g ID=Lus10013563.BGIv1.0 annot-version=v1.0 MGILSTLMGFIGFGFGTSIGCIAGYYMFIYFQPTDVKILNLCRLRILDVWGRAILDSQDPAVRPLVEQDSETLQRMFPEIPLWVKNPDYDRVDWLNKFIA HMWPYLDKAICKTAKEIAKPIIAEQIPKYKIDSVEFEMLTLGTLPPTFQGMKVYVTDEKELIMEPVLKWAGNPNILVGVKAFGLKATVQVIDLQVFAAPR VTLKPLVPTFPCFANIHVSLMEKPHVDFGLKLLGADVMSIPGVYRLVQDIVKEQVAKMYLWPKTLTVPVLDPSKAMRKPVGILTVKVVRAMKLKKKDLLG ASDPYVKLKLTEDKLPSKKTTVKHKNLNPEWDEEFHLVIKDPESQALELMVYDWEQVGKHDKMGMNVVPLKDLTPEEAKVMTLELLKNMDPNDVQNEKSR GQLVVELLYKPFKEDEMPNAVEEANGIEKAPEGTPSGGGLLVVIVHEAQDVEGKNHTNPYVKITFRGEEKKTKHVKKNRDPRWGEEFQFMLEEPPVNDKL HLEVNSVSSRIGLIHPKEVLGYVTINLADVVSNKRINEKYNLIDSRHGKIQVELQWRTSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10013563 [exp]	0	1
AT1G20080		SYT2, NTMCTYPE1...	synaptotagmin 2, Calcium-depen...		Lus10017268 [exp]	1.0	0.8888
AT3G19340			Protein of unknown function (D...		Lus10041512 [exp]	1.4	0.8668
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	4.5	0.8203
AT4G04880			adenosine/AMP deaminase family...		Lus10020056 [exp]	6.2	0.8213
AT3G10540			3-phosphoinositide-dependent p...		Lus10028834 [exp]	6.3	0.8210
AT4G02580			NADH-ubiquinone oxidoreductase...		Lus10002721 [exp]	8.1	0.8166
AT4G10360			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10034433 [exp]	8.9	0.7474
AT3G07890			Ypt/Rab-GAP domain of gyp1p su...		Lus10006410 [exp]	9.9	0.7995
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	16.4	0.7808
AT1G55535			unknown protein		Lus10021858 [exp]	19.7	0.7847

Compare expression of checked genes

Lus10013563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.