Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35020 283 / 6e-96 ROP6, ARAC3, RHO1PS, ATROP6 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) AT3G51300 282 / 2e-95 ATRAC11, ROP1, ARAC11, ROP1AT, AtROP1 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) AT2G17800 282 / 2e-95 ARAC1, ATGP2, ATRAC1, ROP3, AtROP3 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) AT1G20090 282 / 2e-95 ROP2, ARAC4, ATROP2, ATRAC4 Arabidopsis RAC-like 4, RHO-related protein from plants 2 (.1) AT1G75840 281 / 9e-95 ATROP4, ATGP3, AT1G75840.1, ARAC5 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) AT4G35950 279 / 3e-94 ATRAC6, ATROP5, ARAC6, RAC2, AtROP7 RAC-like 2, RHO-RELATED PROTEIN FROM PLANTS 5, RAC-like 6 (.1) AT5G45970 274 / 3e-92 ATRAC2, ATROP7, ARAC2 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) AT3G51290 288 / 1e-90 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT5G62880 258 / 8e-86 ARAC10, ATRAC10, AtROP11 RHO-RELATED PROTEIN FROM PLANTS 11, ARABIDOPSIS THALIANA RAC-LIKE 10, RAC-like 10 (.1) AT3G48040 258 / 1e-85 ROP10, ARAC8, ATROP10, ATRAC8 Arabidopsis RAC-like 8, RHO-related protein from plants 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034538 [exp] 293 / 2e-99 AT4G35020 359 / 2e-128 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10033131 [exp] 289 / 5e-98 AT4G35020 361 / 4e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10014258 [exp] 279 / 1e-93 AT3G51300 394 / 1e-141 ARABIDOPSIS THALIANA RHO-RELATED PROTEIN FROM PLANTS 1, Arabidopsis RAC-like 11, RHO-related protein from plants 1 (.1) Lus10014123 [exp] 275 / 2e-92 AT4G35020 354 / 5e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10017270 [exp] 299 / 6e-92 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10025959 [exp] 273 / 2e-91 AT2G17800 355 / 2e-126 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Lus10019786 [exp] 270 / 3e-90 AT4G35020 355 / 1e-126 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Lus10015298 [exp] 269 / 3e-90 AT5G45970 347 / 9e-124 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Lus10017271 [exp] 293 / 2e-89 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174900 [exp] 288 / 1e-97 AT4G35020 360 / 8e-129 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3) Potri.009G134600 [exp] 286 / 4e-97 AT1G75840 353 / 5e-126 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.005G110700 [exp] 286 / 4e-97 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.007G061500 [exp] 286 / 4e-97 AT2G17800 365 / 8e-131 RHO-RELATED GTPASES FROM PLANTS 3, Arabidopsis RAC-like 1 (.1.2) Potri.005G242000 [exp] 283 / 1e-95 AT1G75840 359 / 2e-128 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.002G019500 [exp] 280 / 2e-94 AT1G75840 352 / 1e-125 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.013G123800 [exp] 272 / 1e-91 AT1G75840 342 / 1e-121 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.019G092300 [exp] 268 / 8e-90 AT1G75840 337 / 9e-120 RHO-LIKE GTP BINDING PROTEIN 4, ARABIDOPSIS THALIANA GERANYLGERANYLATED PROTEIN 3, RAC-like GTP binding protein 5 (.1) Potri.011G061500 [exp] 268 / 1e-89 AT5G45970 344 / 1e-122 RHO-RELATED PROTEIN FROM PLANTS 7, ARABIDOPSIS THALIANA RAC 2, Arabidopsis RAC-like 2, RAC-like 2 (.1) Potri.014G051800 [exp] 263 / 9e-88 AT4G35020 324 / 3e-114 RHO-RELATED PROTEIN FROM PLANTS 6, RAC-like 3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10013564 pacid=23168757 polypeptide=Lus10013564 locus=Lus10013564.g ID=Lus10013564.BGIv1.0 annot-version=v1.0 ATGCCAATCGATCTCCAGGAGAACAACACAGGATCTCTGTCGTCAGCACTTGCTGCGGAAGCCACTTTAGTAAGGAGTACTGTTGCTGAACGTGTCTCGA CGATTGTTCAAAATTTGGCGCTTATCGTCACAGCTTGTTCCTTATCGTTCGCCTTATGTTGGCGAGTTGCAGCTGTTGTGATAGCCACATTTCCTCTCCT CCTTGGAGCCACCCTAGCTGAGCAACTGTTTCTCAAGGGGTTTGGAGGCGACTACAGATCCTACAGCAGGGCAAACGCAGTGGCTAGTGAAGGCATTGCC AACATCAGAACAGTTGCCGCATTCGGAGGGGAAGACAAGATTGCGTCGCAGTTCTCATTCGAGCTCAAGAAACCCAAAAGGCAAGCCCTCCTGAGAAGAC ATGTGTCAGGTTTCGGATACGGCCTCTCGCTGCTACTTTCATTCTGTTCTTATGCTCTGGGTCTGTGGTACGCTTCCATTGTCATCAAGGACAAGCACAC GAATTTTGGAGACGCCATGAAATCGTACCTGATTCTAGTAGTCACGTCCTTCAGAACAGCTGAAACTCTGGCATTGCCCCCCGACATTGACTATGTACCA ACTGTATTCGATAATTTCAGCGCAAATGTTGTGGTGGATGGAAGCACAATCAACTTGGGGTTGTGGGATACTGCCGGTCAGGAAGATTACAACAGACTGA GGCCTCTGAGTTACCGAGGAGCAGATGTCTTTATTCTTGCATTTTCTCTAATTAGCAAGGCCAGCTATGAAAACATTGCCAAAAAGTGGATTCCAGAACT TAGACATTATGCACCTGGGGTTCCAATTATCCTTGTTGGAACAAAACTAGATCTTCGCGACGATAGTCAGTTCTTCAATGACCATCCTGGTGCTGTGCCT ATTACTACTGCTCAGGGAGAGGAACTCCGGAAATTGATTGGAGCTCTGGCATATGTTGAATGCAGTTCCAAAACACAGCAGAATGTGAAGGCTGTGTTTG ATGCGGCCAATAGGGTTGTGCTTCAAACTCCAAAGCAAAAGAAGAAAAAGAGAAAGGGACAGAAGAATTGTTCTATATTGTAA
AA sequence Show only first row Show all	>Lus10013564 pacid=23168757 polypeptide=Lus10013564 locus=Lus10013564.g ID=Lus10013564.BGIv1.0 annot-version=v1.0 MPIDLQENNTGSLSSALAAEATLVRSTVAERVSTIVQNLALIVTACSLSFALCWRVAAVVIATFPLLLGATLAEQLFLKGFGGDYRSYSRANAVASEGIA NIRTVAAFGGEDKIASQFSFELKKPKRQALLRRHVSGFGYGLSLLLSFCSYALGLWYASIVIKDKHTNFGDAMKSYLILVVTSFRTAETLALPPDIDYVP TVFDNFSANVVVDGSTINLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDSQFFNDHPGAVP ITTAQGEELRKLIGALAYVECSSKTQQNVKAVFDAANRVVLQTPKQKKKKRKGQKNCSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51290			Protein of unknown function (D...		Lus10013564 [exp]	0	1
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	6.2	0.7760
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	14.9	0.7580
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	18.7	0.7415
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	20.9	0.7735
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	21.8	0.7283
AT2G39630			Nucleotide-diphospho-sugar tra...		Lus10023414 [exp]	26.5	0.6789
AT1G16570			UDP-Glycosyltransferase superf...		Lus10014357 [exp]	31.9	0.7153
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	38.2	0.7163
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	41.8	0.7223
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	42.7	0.7059

Compare expression of checked genes

Lus10013564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.