Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35030 303 / 4e-98 Protein kinase superfamily protein (.1.2.3) AT2G16750 291 / 3e-91 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 293 / 2e-90 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 283 / 2e-87 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 278 / 5e-85 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G24540 229 / 6e-69 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G24550 231 / 3e-68 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G68690 229 / 4e-67 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G57670 226 / 5e-67 Protein kinase superfamily protein (.2) AT1G52290 222 / 3e-66 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017273 [exp] 825 / 0 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10000968 [exp] 293 / 1e-90 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 289 / 4e-90 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 289 / 6e-90 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 291 / 8e-90 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024154 [exp] 274 / 4e-84 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 271 / 2e-83 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10022129 [exp] 237 / 4e-70 AT3G24550 474 / 3e-159 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10011098 [exp] 234 / 3e-69 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019300 [exp] 412 / 8e-136 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.009G134700 [exp] 339 / 4e-109 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 338 / 7e-109 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 295 / 2e-91 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 291 / 6e-90 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G102400 [exp] 286 / 3e-88 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 285 / 3e-88 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G242800 [exp] 233 / 2e-68 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 228 / 5e-68 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.013G028100 [exp] 226 / 8e-68 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10013566 pacid=23168775 polypeptide=Lus10013566 locus=Lus10013566.g ID=Lus10013566.BGIv1.0 annot-version=v1.0 ATGGCGGTGATTGTTGGAATCGAGCAGGAAACTGGTCTACGGAGGAAGATTTTGTTGAGAAGAGGCAGTTCAGGATTGGCTTCAAGGCTCCAATTGTACA TTGAACAGAACCAGAATAATGCAGATAACAAGTTTCTAATGGATGAAGGAAGCTCGGAGTATGAACGAGCAAAGGCTGATGATGCAGAAGAAGAAGAACA TTGTGATCCTCATCGGAAGAAAATTTTGTCCAAACGAACAATCTCTATAATCAAGAGGGAACTTGAAGGATCCTCATTTGGTTGGCCACTTCTTCGGAGG CAATTTGAACAAGGCCAAGGTGGTTGTGTCCTTGTGAGAGAATTATCTGGAACTGAAGAAGAAGAAGAAACAGAAATAGAAGAAGCATCTGCAGATTACT TTGCCATGAGTCTTCATCCTGTCGAGTGCGGATTGTTTAGCTACGGCCAGCTCAAGAAAGCTACACGAGATTTCTCATCGGAGAGCTTGGTTGGAGAAGG AGGATGTAGCAGTGTGTATAAAGGTCGCCTTCCTGATGGGAACTTAGTTGCAGTGAAGGTTTTGAAACAGTACAAGGAAGCCTGGAACGATTTCTCTTTA GAAGTTGAGATCATGTCTTCCGTAAAGCATCAACACATAACTCCCCTAATTGGTGTCTGCGTTGAACAAAATTCTCTGATGTTGGTCTATGAATTCTTGT CTAATGGCAGTTTGGAGGATAGCTTGCAAGATGATAGCAAGAAGCTACAACTGTCATGGGAAGTGAGGTTCAACGTAGCTGTTAAAGTTGCAGAAGCTCT GAAATACTTGCATTGCGAATGTCCAACGCCAGTAATACACAGAGATGTCAAATCTTCTAATATTCTCCTCTCCAGTGATCTTCAACCGCAGCTATCCGAT TTCGGGCTTGCTATACGGGGACCAACGGATTCAACCCATATGATTAACGACGACCTGGTTGGAACATTTGGGTACATAGCTCCCGAGTACTTTATGCATG GAAGAATGAGTGAGAAAGTAGACATGTACTCATTTGGTATAGTTCTGCTGGAGTTGATCTCGGGAAGGAAACCAATCATCACAAATGGTTCCAAAGCACA AGAGAGCATAGTCAAATGGGCGATTCCATTGATGGAAAGTGGGAATCACAGAGCTTTACTTGATCCAAAGTTGGCGGCTGATAAGGTGGATATTTCACAA ATGGGGAGGATGGTTCTGGCAGCCAGCCTTTGCATCAAACCCTCGGCTAGATTGCGTCCACGAGCACACCAGATCGTTGAGCTCTTGAAGGGACATAAGG GTGAAAAAGAGTGGATAAGCTCCTACATTAACTATTTGACAGAGACGAGCAATGACGATGAAGGTGGTGAAACACCTCCAGGAGGAAATGACTATAAACC TTCTTTCAATCCTTCGCCACTGGTAATAACGTTGGACGATACAGCAAAGCTAACAGTTGGCGCCGAGGCTAAGAAGCCAAGAAAAAAGTTGAAGGACTAC TTGAAAGAAGAGCAGTTTTGA
AA sequence Show only first row Show all	>Lus10013566 pacid=23168775 polypeptide=Lus10013566 locus=Lus10013566.g ID=Lus10013566.BGIv1.0 annot-version=v1.0 MAVIVGIEQETGLRRKILLRRGSSGLASRLQLYIEQNQNNADNKFLMDEGSSEYERAKADDAEEEEHCDPHRKKILSKRTISIIKRELEGSSFGWPLLRR QFEQGQGGCVLVRELSGTEEEEETEIEEASADYFAMSLHPVECGLFSYGQLKKATRDFSSESLVGEGGCSSVYKGRLPDGNLVAVKVLKQYKEAWNDFSL EVEIMSSVKHQHITPLIGVCVEQNSLMLVYEFLSNGSLEDSLQDDSKKLQLSWEVRFNVAVKVAEALKYLHCECPTPVIHRDVKSSNILLSSDLQPQLSD FGLAIRGPTDSTHMINDDLVGTFGYIAPEYFMHGRMSEKVDMYSFGIVLLELISGRKPIITNGSKAQESIVKWAIPLMESGNHRALLDPKLAADKVDISQ MGRMVLAASLCIKPSARLRPRAHQIVELLKGHKGEKEWISSYINYLTETSNDDEGGETPPGGNDYKPSFNPSPLVITLDDTAKLTVGAEAKKPRKKLKDY LKEEQF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	0	1
AT5G18150			Methyltransferase-related prot...		Lus10005698 [exp]	1.0	0.9608
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	3.2	0.9568
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	3.9	0.9540
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	6.3	0.9506
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10013026 [exp]	9.2	0.9505
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10015188 [exp]	10.1	0.9475
AT5G16180		CRS1, ATCRS1	ARABIDOPSIS ORTHOLOG OF MAIZE ...		Lus10017618 [exp]	11.5	0.9354
					Lus10038520 [exp]	12.0	0.9440
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10005362 [exp]	13.0	0.9470
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10021193 [exp]	13.2	0.8930

Compare expression of checked genes

Lus10013566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.