Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42150 459 / 7e-164 Glutathione S-transferase family protein (.1) AT5G16710 41 / 0.0006 DHAR3 dehydroascorbate reductase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017275 [exp] 654 / 0 AT5G42150 454 / 9e-162 Glutathione S-transferase family protein (.1) Lus10042104 [exp] 41 / 0.0002 AT5G63030 177 / 1e-58 glutaredoxin C1, Thioredoxin superfamily protein (.1) Lus10001237 [exp] 41 / 0.0002 AT5G63030 171 / 2e-56 glutaredoxin C1, Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242500 [exp] 484 / 1e-173 AT5G42150 458 / 1e-163 Glutathione S-transferase family protein (.1) Potri.012G046600 [exp] 411 / 6e-145 AT5G42150 407 / 2e-143 Glutathione S-transferase family protein (.1) Potri.015G038300 [exp] 404 / 1e-141 AT5G42150 387 / 1e-135 Glutathione S-transferase family protein (.1) Potri.001G347700 [exp] 43 / 4e-05 AT5G40370 158 / 1e-51 glutaredoxin C2, Glutaredoxin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10013568 pacid=23168712 polypeptide=Lus10013568 locus=Lus10013568.g ID=Lus10013568.BGIv1.0 annot-version=v1.0 ATGAGGAGAGCCCACGGACTTACTACCTATGGCCGAGCCATTGCCTCCGGATCTGGCTTCCAAGCTGCTGTGGCACCAACGCCGACCCCTCTTTTTCGAT CCGCAATGTTCAGCACTTCTTCTGTTTCAGGTCCGCAGTGGCCCTCGCGGAGATTAGCTGATTATTTCGGCCTTAAGGGGACTTCCGTCGCTGCTGGAGT AGTCGGGACGATGTTCTTCTCCGTCGCGGCGTCGTCTATGGCGCAGGAGGTTCACGCCAAGGAGTTGCCCAAATTCATTCCCAAGGATGTTGTCCTGTAT CAGTATGAAGCTTGCCCTTTCTGTAACAAGGTTAAAGCATTCTTGGATTACTACAGCATTCCATATACAGTGGTAGAAGTTAACCCGATTAGTAAGAAGG AGATTAAGTGGTCTGAGTACAAGAAGGTGCCGATACTCACTGTTGATGGAGAACACATGGTTGACTCCTCAGAGATAGTTAGCCAATTGTTTAAAAAGAT ACATCCGGAGGGCTCCAATGTAGAAGTTGAAGAAGAAACAAAGTGGCGAAAGTGGGTGGACGGTCACTTGGTTCATGTTTTGTCGCCAAATATTTACAGA AGTACATCTGAGGCTCTCGAGTCATTTGACTATATTACTAGCCATGGGAATTTCAGCTTCACAGAGAGGTTGGTAGCGAAATATGCTGGAGCAACAGCAA TGTATTTTGTGGCGAAGAAACTTAAGAAGAAGTATAACATCACTGATGAACGTGCAGCCTTGTACGAGTCTGCTGAAACATGGGTGGATGCGCTTAAGGG CCGCGACTATCTTGGTGGCTCACGTCCTAATCTGGCTGATCTGGCGGTTTTTGGTGTTCTAAGGCCAATCAGATACCTTAAATCCGGGAAAGATATGGTG GAACATACTCGTATTGGAGAATGGTACTCTAGGATGGAGGGTGCAGTGGGGGAACCTTCAAGAATTAATGCATGA
AA sequence Show only first row Show all	>Lus10013568 pacid=23168712 polypeptide=Lus10013568 locus=Lus10013568.g ID=Lus10013568.BGIv1.0 annot-version=v1.0 MRRAHGLTTYGRAIASGSGFQAAVAPTPTPLFRSAMFSTSSVSGPQWPSRRLADYFGLKGTSVAAGVVGTMFFSVAASSMAQEVHAKELPKFIPKDVVLY QYEACPFCNKVKAFLDYYSIPYTVVEVNPISKKEIKWSEYKKVPILTVDGEHMVDSSEIVSQLFKKIHPEGSNVEVEEETKWRKWVDGHLVHVLSPNIYR STSEALESFDYITSHGNFSFTERLVAKYAGATAMYFVAKKLKKKYNITDERAALYESAETWVDALKGRDYLGGSRPNLADLAVFGVLRPIRYLKSGKDMV EHTRIGEWYSRMEGAVGEPSRINA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42150			Glutathione S-transferase fami...		Lus10013568 [exp]	0	1
AT5G42150			Glutathione S-transferase fami...		Lus10017275 [exp]	1.0	0.9379
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	12.1	0.9310
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	18.8	0.9188
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	20.2	0.9138
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Lus10025686 [exp]	22.6	0.9033
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	23.2	0.9094
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10007619 [exp]	26.7	0.9022
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	28.5	0.9051
AT1G36280			L-Aspartase-like family protei...		Lus10028260 [exp]	29.1	0.9012
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10040546 [exp]	31.5	0.9017

Compare expression of checked genes

Lus10013568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.