Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35070 93 / 6e-22 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT1G45976 62 / 6e-11 SBP1 S-ribonuclease binding protein 1 (.1) AT3G12920 60 / 4e-10 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G32740 57 / 5e-09 SBP (S-ribonuclease binding protein) family protein (.1) AT1G60610 55 / 2e-08 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 54 / 3e-08 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 53 / 7e-08 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 52 / 2e-07 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G45100 49 / 2e-06 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 47 / 6e-06 SBP (S-ribonuclease binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017276 [exp] 260 / 4e-87 AT4G35070 122 / 2e-34 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 127 / 1e-35 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 125 / 7e-35 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10016867 [exp] 113 / 2e-31 ND / Lus10002049 [exp] 106 / 1e-27 ND / Lus10010849 [exp] 104 / 1e-27 ND / Lus10005768 [exp] 103 / 8e-26 AT5G52140 90 / 7e-21 RING/U-box superfamily protein (.1) Lus10021853 [exp] 100 / 2e-25 ND / Lus10015574 [exp] 100 / 4e-25 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G019000 [exp] 139 / 5e-39 AT4G35070 148 / 6e-43 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.005G242600 [exp] 124 / 2e-33 AT4G35070 135 / 3e-38 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.004G175500 [exp] 114 / 8e-30 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.009G135400 [exp] 98 / 8e-24 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 60 / 6e-10 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.012G082200 [exp] 59 / 1e-09 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.002G124700 [exp] 58 / 2e-09 AT1G45976 378 / 2e-131 S-ribonuclease binding protein 1 (.1) Potri.001G148600 [exp] 55 / 2e-08 AT1G32740 221 / 4e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.010G042200 [exp] 53 / 1e-07 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.015G118000 [exp] 51 / 4e-07 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013569 pacid=23168720 polypeptide=Lus10013569 locus=Lus10013569.g ID=Lus10013569.BGIv1.0 annot-version=v1.0 ATGGCTGTTCAAGCCCAGCCCTTCCTCTTCCCCATGTGTGCTTCCGACCTCGATCATCACCTCCCACCCTGTTTCCCTATTTTCCATGACTCCCATCCAC ACCTATCACCACCCAACAACCTCTTCCTCTCTCAACCGCCGGCGGAAGCTTCTACCTCCACCTCCCTCCACCAACACCTCCAGATTCAGCGGCAGCAGCT CGACGCCGTTCTCCAACTCCAGAACGAGAGGCTAAGAATGGCGTTACAAGAACAGAGGAAGCAACAAATAGGGGTTCTATTGAAAGTTATCGAAGCCCGT GCCACGTCGATGCTGAGGCGGAAGCAGGATGAAATGGCATTAGCGGCGAGGAAAAAGGCTGAGCTGGAGGCTTGCTTAAGTAGAGCCGAGGCGGAGAAGG ACACGTGGCAAAGGCTGGCTATGGAGAAGGAAGCGGCGGTGGCGGATCTTAAACGCCAGCTGGAGCGAATGAGAGGAGGAAACGACGCCGCTGCAGAGGA TGCAGAGTCTTCCGCCGGAGATGATGAGTGGGATGGAAATGGAAATGGAAATGGCGGTGGTGGTTGCAAGAGGTGCGGGATTGGAGAGGCGTGTATGGTG TTTCTGCCGTGTAGGCATGTGTGCTCCTGCAAGGACTGTGAAGGGTTTCTGGCCATTTGCCCTGTCTGTACATCTCTCAAGGAAGCCACCCTCGAGGGAG GTTCTTGTGATGATGATGTTGAAGAACAAATGAATTATGGTGGTTATTTCTTAAACGGATTGTTTTACGACACACAAGATTATGCGTGTGATGCGGCGAA GGACATTGCTTTAAGGTTAGGGTTTCAATTGATTCGCGACCCACATAAGAACAACCCGGGTGAAGAAGAAAAATGTTTGTACTTGTATTGCTCGCATGGT GGTAGGAGCAAATGA
AA sequence Show only first row Show all	>Lus10013569 pacid=23168720 polypeptide=Lus10013569 locus=Lus10013569.g ID=Lus10013569.BGIv1.0 annot-version=v1.0 MAVQAQPFLFPMCASDLDHHLPPCFPIFHDSHPHLSPPNNLFLSQPPAEASTSTSLHQHLQIQRQQLDAVLQLQNERLRMALQEQRKQQIGVLLKVIEAR ATSMLRRKQDEMALAARKKAELEACLSRAEAEKDTWQRLAMEKEAAVADLKRQLERMRGGNDAAAEDAESSAGDDEWDGNGNGNGGGGCKRCGIGEACMV FLPCRHVCSCKDCEGFLAICPVCTSLKEATLEGGSCDDDVEEQMNYGGYFLNGLFYDTQDYACDAAKDIALRLGFQLIRDPHKNNPGEEEKCLYLYCSHG GRSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10013569 [exp]	0	1
AT2G29340			NAD-dependent epimerase/dehydr...		Lus10004985 [exp]	4.2	0.9534
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10025739 [exp]	9.6	0.9447
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10019110 [exp]	9.7	0.9513
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10022203 [exp]	12.0	0.9285
AT2G45300			RNA 3'-terminal phosphate cycl...		Lus10030282 [exp]	13.1	0.9469
AT4G33330		PGSIP3, GUX2	glucuronic acid substitution o...		Lus10021731 [exp]	15.4	0.9426
AT5G66120			3-dehydroquinate synthase, put...		Lus10028429 [exp]	16.0	0.9439
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	20.2	0.9434
AT3G27200			Cupredoxin superfamily protein...		Lus10022350 [exp]	21.4	0.9418
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10025854 [exp]	22.6	0.9391

Compare expression of checked genes

Lus10013569 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.