Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20110 582 / 0 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G14270 67 / 2e-11 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT4G33240 65 / 1e-10 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT1G61690 62 / 1e-09 phosphoinositide binding (.1) AT3G43230 61 / 1e-09 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G29800 60 / 3e-09 RING/FYVE/PHD-type zinc finger family protein (.1.2) AT3G47660 52 / 8e-07 Regulator of chromosome condensation (RCC1) family protein (.1) AT5G19420 50 / 5e-06 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT1G69710 48 / 2e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT1G65920 47 / 3e-05 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017277 [exp] 920 / 0 AT1G20110 654 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007623 [exp] 66 / 3e-11 AT1G61690 354 / 6e-113 phosphoinositide binding (.1) Lus10038127 [exp] 66 / 8e-11 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10027659 [exp] 65 / 1e-10 AT3G43230 654 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10005173 [exp] 65 / 2e-10 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10018391 [exp] 65 / 2e-10 AT1G61690 838 / 0.0 phosphoinositide binding (.1) Lus10038129 [exp] 65 / 2e-10 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10029271 [exp] 60 / 3e-09 AT1G29800 713 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Lus10007320 [exp] 60 / 3e-09 AT1G29800 709 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018900 [exp] 696 / 0 AT1G20110 566 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G242700 [exp] 668 / 0 AT1G20110 555 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G072300 [exp] 73 / 4e-13 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 70 / 4e-12 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.004G062500 [exp] 65 / 9e-11 AT1G29800 729 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.018G064200 [exp] 64 / 1e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.006G135800 [exp] 64 / 2e-10 AT3G43230 649 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.011G032200 [exp] 64 / 2e-10 AT1G61690 773 / 0.0 phosphoinositide binding (.1) Potri.011G071900 [exp] 62 / 9e-10 AT1G29800 744 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2) Potri.011G106700 [exp] 59 / 6e-09 AT1G29800 703 / 0.0 RING/FYVE/PHD-type zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF01363 [flax] [poplar] FYVE FYVE zinc finger CL0266 [flax] [poplar] PH PF08416 [flax] [poplar] PTB Phosphotyrosine-binding domain
Representative CDS sequence Show only first row Show all	>Lus10013571 pacid=23168768 polypeptide=Lus10013571 locus=Lus10013571.g ID=Lus10013571.BGIv1.0 annot-version=v1.0 ATGCAACAGGGCGATTACTCCTCCTACTACCAGTTCCCCAACTTCCAAAACCCTAACCCCAATCTCAATCCCAATCCCAATGCCAATCCCAACCCGATCG ATCACAACCAGAGCTCATCATTCGCATCAGCGCCACCATTCTCATCCAGCTACGCTCCCTCCGATTACTCCGCGTATCCTCAATCTTATCCTCCTTACTC ATCCAATCCCGATCCCGCTCCTTACGCCCCGCCGGTGAATTCCCAATCCTCTTTCAACCCCACTCCTCCTCCTCCTCCTCCAACTCAGCCACCGGTGTTT CCTACGTATGATTCTCATGGATCTGCTGCTACTGCTTACCAACAGCAACCTGCCGCGCAGCAGTCCTATTTCCCGCCGTTTGATCATCATCAGACGGCTG CTAGTTACGCCCCGCCCCCGCCCCAGCCACCGGCTGCCGCATCGAATCTGATCCCTGGATCTGGTGCTCCGTATTCGTTAGGGTATTCTGGTTCTTTAAA TTCAATCGGAGGATTGACGGCCCCATCTGCATTTGATAATCCGTATGAGAACTCTCCAAAATTTGATCAGGGTGTTGGTTATTTCGACGACAAGTATGGG GTATATAACAGAGGCAGGTCCGAGTTGGCTTCCGATCCTTATGGGAAGCGACCCGAAGGAGGAAGGTACGAAATGGGGCGTGATGACGGATACGGGGACG GTGTTTATGCATACCAAGGAGGGAAGGTGGAGCCGTATGGTGCGCGTGGGACCGCACCGAAATCTTCCACCTCGGCGATGTTTGATGATTATGGAAGAGC CATCAACATACCTAGCTCAAAGGACTCTTCATTGGGTTCAGGTGCGGGTTTCGGTTCTCCTAAGATCGTGCGGGCAGTACCGAAGATGGAAACGCAGGAA GATGTGAAAAGCGGGGTCCAGAAGTTCAGGGTTAAGCTTCTGGCTGAAAGTGGGGGTCAGAGCACCATAGATGTGCTTTGCCAGATTGGATTGGATGGAA TAAAGATGCTGGATCCCAATACCAGCCGGACTCTTAGAATCTACCCCCTTGAGAACATCACTAGATGCGATAAAATGGACTCGTCAACTTTTGCCTTTTG GTCCAAGAGCACCGTTGATGTTGAACCAAGGCGTATCAGATTGCAATCAAATAGTTACACCACTAATACACTTCTTGACACGGTGACTGCTGCAACTGTA CAGCTTAAGGAAATGGGGGGAAGAAGCAAGCCTTCTGATCTTTCAAAGGCATCTGAGCAGACTGCAGAGAAGAAGAAAGGTTTTGGTGAGTGGATAAACT TCGTTAAGCCACCAAATGAAGAAAAAGATCATTGGGTCCCTGATGAAGCAGTTACAAAGTGTACATCATGTGGGACTGATTTCAATGCATTTATCCGTAA GCACCACTGCAGAAACTGTGGAGACATATTCTGTGATAAGTGTACGCATGGAAGAATTGCTCTTACTGCTGAGGAGAGTGCCCAGCCAGTGAGAGTTTGT GACCGATGCCTGGCAGAAGTGACACAGAGGCTGACTAATTCTAAAGAAGCAGCGAGTAAACCTGCAGCGTTACACAGCCATGAGGACCTTGCCAGGAAGC TTCAGGAGGAGATGGAGAAGAATCGCAAGTCATCTTCAGGAACAAAGTCGGACGGATCCGGGAAGAGAATGAGAGAAGTTGCATGCCCAACTTGTACGGT TCACCTACAGGTTCAGGTTCCAAGTTCGGGTTCAGAGACTATCGAGTGTGGCGTCTGTCAGCATCCGTTTCTAGTGAGTGCTCACTGA
AA sequence Show only first row Show all	>Lus10013571 pacid=23168768 polypeptide=Lus10013571 locus=Lus10013571.g ID=Lus10013571.BGIv1.0 annot-version=v1.0 MQQGDYSSYYQFPNFQNPNPNLNPNPNANPNPIDHNQSSSFASAPPFSSSYAPSDYSAYPQSYPPYSSNPDPAPYAPPVNSQSSFNPTPPPPPPTQPPVF PTYDSHGSAATAYQQQPAAQQSYFPPFDHHQTAASYAPPPPQPPAAASNLIPGSGAPYSLGYSGSLNSIGGLTAPSAFDNPYENSPKFDQGVGYFDDKYG VYNRGRSELASDPYGKRPEGGRYEMGRDDGYGDGVYAYQGGKVEPYGARGTAPKSSTSAMFDDYGRAINIPSSKDSSLGSGAGFGSPKIVRAVPKMETQE DVKSGVQKFRVKLLAESGGQSTIDVLCQIGLDGIKMLDPNTSRTLRIYPLENITRCDKMDSSTFAFWSKSTVDVEPRRIRLQSNSYTTNTLLDTVTAATV QLKEMGGRSKPSDLSKASEQTAEKKKGFGEWINFVKPPNEEKDHWVPDEAVTKCTSCGTDFNAFIRKHHCRNCGDIFCDKCTHGRIALTAEESAQPVRVC DRCLAEVTQRLTNSKEAASKPAALHSHEDLARKLQEEMEKNRKSSSGTKSDGSGKRMREVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	0	1
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	1.4	0.9006
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	2.0	0.8973
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10034525 [exp]	2.2	0.8917
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	2.4	0.8972
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015400 [exp]	4.2	0.8735
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	4.9	0.8759
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	5.3	0.8961
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	8.1	0.8637
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Lus10030730 [exp]	8.2	0.8425
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10017277 [exp]	10.0	0.8369

Compare expression of checked genes

Lus10013571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.