Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75900 434 / 4e-153 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G75880 378 / 1e-130 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT5G42170 377 / 2e-130 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 365 / 1e-125 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G58725 364 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 364 / 2e-125 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G14820 362 / 2e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58520 348 / 2e-119 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G20120 348 / 1e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59030 344 / 2e-118 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017278 [exp] 576 / 0 AT1G75900 376 / 5e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 502 / 1e-179 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 500 / 7e-179 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 380 / 1e-131 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 378 / 1e-130 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10017279 [exp] 369 / 2e-127 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013573 [exp] 360 / 9e-124 AT3G14820 367 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 343 / 4e-117 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 343 / 7e-117 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018800 [exp] 454 / 4e-160 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G242800 [exp] 441 / 2e-155 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 295 / 3e-98 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.009G151000 [exp] 292 / 3e-97 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 291 / 5e-97 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 288 / 1e-95 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.013G153000 [exp] 275 / 2e-90 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.008G076600 [exp] 273 / 1e-89 AT1G06990 353 / 4e-121 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 273 / 2e-89 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G051900 [exp] 270 / 1e-88 AT5G45950 430 / 3e-151 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013572 pacid=23168766 polypeptide=Lus10013572 locus=Lus10013572.g ID=Lus10013572.BGIv1.0 annot-version=v1.0 ATGGGACGAGGATCCCCGCCGACGTGGAGTGGAATAAAGGTGTCGTCGTCGGCCTCGCGGAATGTCAGCAATAATATCCCAGCTATTCTGATATTCGGAG ACTCGATCATGGACACCGGCATGAACAACAACCTCAACACCGTCGTCAAGTGCAACTTTCTCCCCTACGGAGCTGACTTCCAAGGCGGCTTGCCGTCCGG CAGATTTTGTGACGGCAAAGTTCCTTCCGACATAATCGCGGAGGCATTGGGAATAAAAGAGATAGTGCCAGCATACTTGGACCCAACATTGAAGCCCACT GATCTCCCAACTGGAGTCTCCTTTGCTTCTGGTGGCGCTGGATACGACCCTCTCACCTCCAAGTTAGCGTCGGTAGTGTCAATGAGCCAACAGCTAGAGT ACTTGAAAGAATACACTGCAAAGCTGAAATTAGTGGTTGGGGAAAGCAGAACCAACTCCATCTTATCCAACAGCTTGTTCCTCGTTGTTGCCGGCAGCGA CGACATCGCCAATACTTACTTCCTCCTTGGAGCTCGACATCACTACGACCTCCCTTCTTATACTGATCTTATGTCCAACTCTGCTTCTGATTTCATTCAG GAATTGTACAAACTTGGCGCGCGGAAGATTGGGGTGTTCAACGCGCCGCCGATCGGGTGCGTGCCATCTCAACGAACATTAGCAGGCGGCGACGACAGAA AATGTGCCGAAGATCGGAACGAAGCGGCTCTTGTATTCAACTCCAAACTAGAACCGAAGCTGAAGACACTTGGTCAAACTTTGACCAGTTCGAAGATCGT GTACATAGACGTGTACACTCCGTTGCTTCAACTGATTCAAAACCCACAGAAATTTGGGTTCCAAGAGTCGGAGAAAGGGTGCTGCGGGACGGGATTGCTG GAGGTGGCCGTGCTGTGTAATAAGCTAATACCCACGTGCGCAAATGCGTCGTCTCATGTGTTCTGGGACAGTTTCCATCCTACTGAAAGCACTTACAGGC TTCTGGTTGCGCAACTGCTGGATAAGTACATGGGAGATCTGTCGTGA
AA sequence Show only first row Show all	>Lus10013572 pacid=23168766 polypeptide=Lus10013572 locus=Lus10013572.g ID=Lus10013572.BGIv1.0 annot-version=v1.0 MGRGSPPTWSGIKVSSSASRNVSNNIPAILIFGDSIMDTGMNNNLNTVVKCNFLPYGADFQGGLPSGRFCDGKVPSDIIAEALGIKEIVPAYLDPTLKPT DLPTGVSFASGGAGYDPLTSKLASVVSMSQQLEYLKEYTAKLKLVVGESRTNSILSNSLFLVVAGSDDIANTYFLLGARHHYDLPSYTDLMSNSASDFIQ ELYKLGARKIGVFNAPPIGCVPSQRTLAGGDDRKCAEDRNEAALVFNSKLEPKLKTLGQTLTSSKIVYIDVYTPLLQLIQNPQKFGFQESEKGCCGTGLL EVAVLCNKLIPTCANASSHVFWDSFHPTESTYRLLVAQLLDKYMGDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	4.1	0.9119
					Lus10007598 [exp]	4.6	0.8785
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10003226 [exp]	7.2	0.8912
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10000676 [exp]	10.5	0.8694
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	14.7	0.8944
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	15.0	0.8944
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	16.3	0.8879
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10007778 [exp]	19.2	0.8780
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	19.8	0.8648
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Lus10040139 [exp]	19.9	0.8656

Compare expression of checked genes

Lus10013572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.