Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14820 330 / 8e-112 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 316 / 2e-106 SGNH hydrolase-type esterase superfamily protein (.1) AT1G75890 316 / 3e-106 EXL2 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G75880 313 / 6e-105 EXL1 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G75900 305 / 5e-102 EXL3 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 303 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 303 / 1e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20120 294 / 5e-97 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20132 290 / 8e-96 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G43570 288 / 1e-95 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017279 [exp] 600 / 0 AT3G14820 370 / 1e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034541 [exp] 518 / 0 AT1G75880 379 / 7e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003719 [exp] 516 / 0 AT1G75880 379 / 8e-131 SGNH hydrolase-type esterase superfamily protein (.1.2) Lus10003717 [exp] 358 / 8e-123 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034540 [exp] 356 / 4e-122 AT1G75900 456 / 2e-161 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 329 / 2e-111 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 298 / 2e-99 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1) Lus10026074 [exp] 285 / 4e-94 AT1G75900 339 / 3e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034542 [exp] 282 / 4e-93 AT1G75900 340 / 6e-116 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242800 [exp] 364 / 3e-125 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G018800 [exp] 364 / 9e-125 AT1G75900 415 / 2e-144 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160200 [exp] 254 / 5e-82 AT2G42990 437 / 3e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G219700 [exp] 253 / 1e-81 AT2G42990 439 / 1e-154 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G205100 [exp] 248 / 3e-79 AT2G42990 492 / 2e-175 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.014G160100 [exp] 245 / 9e-79 AT2G04570 497 / 5e-178 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G153000 [exp] 244 / 3e-78 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.009G151000 [exp] 243 / 1e-77 AT5G22810 504 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G062000 [exp] 237 / 2e-75 AT5G45960 440 / 8e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.006G118300 [exp] 234 / 2e-74 AT5G03820 478 / 2e-170 GDSL-like Lipase/Acylhydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10013573 pacid=23168770 polypeptide=Lus10013573 locus=Lus10013573.g ID=Lus10013573.BGIv1.0 annot-version=v1.0 ATGTCCCGTTCATCGATTCCGGCCGTTCTTCTCATCGGGATCCTTCTTTTTGCCGCCGGCGCCAGGGCACGGGTTCTCCCGGCCAACGAGAGCTCCGTGC CGGCGGTTTTGATATTCGGAGACTCGATCGTCGATACCGGTAACAATAACGACCTTCCCTCCCCTGCCAAGAGCAACTTCCCGCCCTACGGCAGGGATTT CCAAGGCGGAGTTCCCACCGGAAGATTCTCCAACGGGAAAGTCCCCTCCGATTTCTTAGTGGAGGAACTTGGAATTAAGGAGACTCTGCCAGCGTACAAG GATCCGAAATTAAAGCCAGAGGATCTTCTCACCGGCGTTTGCTTCGCTTCCGGCGGTGTCGGCTTCGATGACTTATCATCTCAAACTGCTTCGGTACCAC CACTGAGCGAACAGCTAAAGCAGTTCAGAGAATACGTAATCAGAGTAAAAGCGATGATCGGAGAAGAAGAAACCCGTAAACTACTGAGCAAGAGCTTAGT GATAATAATGCTGAGTAGCAACGACATAGCCAACACTTACTTCAATTCTCGCCTTCGAGAAATCCAATATGACTTCCCTACTTACGCTGATATTTTGGTC AGCATCGCCTCTACTTTCGTCCGGGATTTGTACTCAATTGGGTGCCGGAGGATTGGAGTGTTCGGAGCGCCGCCCCTGGGATGCATTCCGTCCAGCAGAA CCATTGCCGGCGGAATTGAAAGAAAGTGCAGCGACAAGTATTACAAAGCATCACAACTCTTCAACTCTAAATTATCTTCAACGTTAACTACACTAAATAA AAAATTGGGACTTGAGTCAAGGATTGTGTACATGGACATCTACTACCCCATTCTTGATATCATCAACAATCATCGCTTTTACGGATTCGAAATAGCGGAC AAAGGGTGTTGTGGAACGGGGAAAATAGAGGCATCAGTGTCGTGTAATATGTACAGCCCATTCACATGTACAGACGATACTAAGTATATGTTTTGGGACG GCTACCATCCGACGGAGAAGGTTTACAAGCTTCTGGTGAAATTGATTCTAATCAAGTACTTCAACTTTTTCATGTAG
AA sequence Show only first row Show all	>Lus10013573 pacid=23168770 polypeptide=Lus10013573 locus=Lus10013573.g ID=Lus10013573.BGIv1.0 annot-version=v1.0 MSRSSIPAVLLIGILLFAAGARARVLPANESSVPAVLIFGDSIVDTGNNNDLPSPAKSNFPPYGRDFQGGVPTGRFSNGKVPSDFLVEELGIKETLPAYK DPKLKPEDLLTGVCFASGGVGFDDLSSQTASVPPLSEQLKQFREYVIRVKAMIGEEETRKLLSKSLVIIMLSSNDIANTYFNSRLREIQYDFPTYADILV SIASTFVRDLYSIGCRRIGVFGAPPLGCIPSSRTIAGGIERKCSDKYYKASQLFNSKLSSTLTTLNKKLGLESRIVYMDIYYPILDIINNHRFYGFEIAD KGCCGTGKIEASVSCNMYSPFTCTDDTKYMFWDGYHPTEKVYKLLVKLILIKYFNFFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10013573 [exp]	0	1
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10023732 [exp]	10.8	0.9941
AT3G24130			Pectin lyase-like superfamily ...		Lus10016678 [exp]	14.6	0.9937
AT5G14010	C2H2ZnF	KNUCKLES, KNU	KNUCKLES, C2H2 and C2HC zinc f...		Lus10011884 [exp]	14.8	0.9288
AT4G36250		ALDH3F1	aldehyde dehydrogenase 3F1 (.1...		Lus10031280 [exp]	18.7	0.9911
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Lus10019086 [exp]	22.8	0.9805
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10001279 [exp]	23.2	0.9900
AT1G17260		AHA10	autoinhibited H\(+\)-ATPase is...		Lus10037466 [exp]	25.4	0.9665
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032263 [exp]	26.1	0.9893
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10017279 [exp]	26.8	0.9848
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10024627 [exp]	28.0	0.9893

Compare expression of checked genes

Lus10013573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.