Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11320 377 / 2e-128 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017280 [exp] 823 / 0 AT1G11320 371 / 1e-125 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G242900 [exp] 447 / 1e-155 AT1G11320 389 / 4e-133 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013574 pacid=23168753 polypeptide=Lus10013574 locus=Lus10013574.g ID=Lus10013574.BGIv1.0 annot-version=v1.0 ATGGAACCCGTAGTGGGGAAAATGAAGGACTTGGCTAAGTCAACTCAAGACTTCTTTGATGGCGTCTTCCATAATCGCACCAACTCTTCTCGCCGCAATC CGATTGAGATCCTCAAGCGGTTGCAGCGAGAGACATTTTCTGATCTGATGAAAGTTAGAGAGAGGCAGGACAAGCTTGAGCGAGTATTGTCTTACCAAAA AGTTGTTAAGGGAAGCCCGTTTCGAGATTCTGGTACTCGTGTTAGGGGAGAGATTGATGCTCTAGGTGTTGTACTGATGACGGGTGATGTTGATCAGCTG CACAATCACGTGCTTGGCCAAGCAGGAATGAATGGTGGAGTCAGATCGAAGATATCTTTTGAGTCCCCCATACGCGAAAAGGATACTCTTATAGCAGAGT TTGTGACTGGTCAGAATCCCACTGGAAACAATGGTGAAATCTTGGGGAGCACACTTTGTCTGTCGAAAGTATTGTTTGCCTCACATGTTTGTGACTGGTT CTCAGCTACAATCATGCCTGTAGGAGCTCAGTTCAGGCACCTTGGATTCACTACAGATTCTTCAAATCAGATAAAGGGCCTGACAGAGCTTTCAGCCATT GGACCTCCTCTCCTGACTGAACAAAACGGTTCTGCTATCGGCTTCACAGTGAGAAAGTCCAATCTTACCGGTTCCTTGGCTCAATCTCTTACTGGACTGA GGAAAACAAGCTTATATTCTCATGGATCAGACCATTGCTTCAACACGTTTGGCCAAATTGTGTGTGAATTACCAAAGGGAGTCAAACTTTGTGTTCTGGG TTTGCACAAACAGCCTCAATCATCTCGTGGGATTCTCCAGCAAGGAGCGGTTGTGTTACCTGTAGGCATCTTAAAACATCAAGATGCTCCTGAGCAAAAT GAACACTTAACTCCTCCTCGCCTGGAAACAGATCTCTTCGGAACTACCCCAACGGGGTCTATTGCTGTGAAGCTGGAGTCACACTTTGACGAGAGCACAA AAATTGAGGGTTGGGTACAGAGGAATAACTCTACCCCCAACCTTGTCCAATGGGCTGTGAATGCAATGGACGATTCTGAAGAAGAACTCGGGTGGGGGAT GAGCATTGGTGGCACGGTGGATAGTCAAGCTAGCTTGAGCCGGTTTCAAGCAGAATCGTACTTGAAGTTCAATCTTGGGAAGAAGTTGTGCGTCAAGCCA GGGGTAGCATATGCAGGGGATAATAGTTCAAGAATGTTTGGGCTCATGCTTAGGTCTAACTGGTCGTTCTGA
AA sequence Show only first row Show all	>Lus10013574 pacid=23168753 polypeptide=Lus10013574 locus=Lus10013574.g ID=Lus10013574.BGIv1.0 annot-version=v1.0 MEPVVGKMKDLAKSTQDFFDGVFHNRTNSSRRNPIEILKRLQRETFSDLMKVRERQDKLERVLSYQKVVKGSPFRDSGTRVRGEIDALGVVLMTGDVDQL HNHVLGQAGMNGGVRSKISFESPIREKDTLIAEFVTGQNPTGNNGEILGSTLCLSKVLFASHVCDWFSATIMPVGAQFRHLGFTTDSSNQIKGLTELSAI GPPLLTEQNGSAIGFTVRKSNLTGSLAQSLTGLRKTSLYSHGSDHCFNTFGQIVCELPKGVKLCVLGLHKQPQSSRGILQQGAVVLPVGILKHQDAPEQN EHLTPPRLETDLFGTTPTGSIAVKLESHFDESTKIEGWVQRNNSTPNLVQWAVNAMDDSEEELGWGMSIGGTVDSQASLSRFQAESYLKFNLGKKLCVKP GVAYAGDNSSRMFGLMLRSNWSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11320			unknown protein		Lus10013574 [exp]	0	1
AT1G11320			unknown protein		Lus10017280 [exp]	1.0	0.9688
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	3.7	0.9645
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Lus10002565 [exp]	4.0	0.9432
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	4.7	0.9307
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10010489 [exp]	5.4	0.9270
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	5.7	0.9394
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Lus10008189 [exp]	6.6	0.9476
					Lus10027730 [exp]	7.1	0.9415
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10019328 [exp]	7.3	0.9329
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Lus10000052 [exp]	7.3	0.9568

Compare expression of checked genes

Lus10013574 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.