Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11670 524 / 3e-175 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) AT4G00550 329 / 2e-104 DGD2 digalactosyl diacylglycerol deficient 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021273 [exp] 640 / 0 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004200 [exp] 563 / 0 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 501 / 4e-169 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10009820 [exp] 333 / 9e-107 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10040927 [exp] 325 / 5e-103 AT4G00550 714 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10029404 [exp] 312 / 8e-102 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 215 / 9e-66 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004199 [exp] 0 / 1 ND 42 / 2e-11
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070200 [exp] 562 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 550 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.014G079400 [exp] 326 / 4e-103 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10013576 pacid=23168745 polypeptide=Lus10013576 locus=Lus10013576.g ID=Lus10013576.BGIv1.0 annot-version=v1.0 ATGAGACAGTCCTTCACGATTCGTTCCTCCTCTTCCTCTTCCTCGTCGTCGTCGACGGACGCATTTTCTTTCATCTCCAAAGGATGGCGGGAGGTCCGGG ACTCGGCGGATGCGGATCTCCAACTGATGAGGGCGAGGGCCAAATCGTTCAAGAACCTGGCATCGTCCTTCGACCGTGAGCTAGAGAACTTCTTCAGCTC CGCTGCCACGCCGTCGGAGAGCGATTTCGTGAAGAGGATTCAACCCAAGTTGACGGAGTTTCGGAGGGTGTACTCGGCTCCGGAGATTAGCAAGAAGGTC CTGGAGAAGTGGGAGCCCACGAAGGCGAAACTAGGGATTGATTTGTCGAGCATAAGGAATGCTTTAGTGTCCGAGGTGGAAGGGTATGATGGTGATGTGG ACAGGAGTGTCGAGTTTGATAGGGTGTGGAGGGGTAGGAGGAGGCTCAAGTTTAATGAGTTCTGGGGCGAATGGAAAGTTGAGGGGGAAGGGAATCAGAT TGAGGAGTGGAAACCGATTCGTGATTTGAAGAGGCGGTTTAAGGAGCTGGAGAAGAAGAGTGAATTGGGGGAGATTATTGAGGGTTTTAAGAATGGTGAG ATTGTGGAGAAGGTGAAGTCCAGCTTGAAATCAATTTGCAAGGATCCTCAAGAATCACAGGAAGTACCACCACTTGATGTACCAGAACTATTGGCAAGTT TGGTAAAACAATCTGGGCCTTTTCTGGATCAGCTTGGTGTCAGAAGAGATATATGTGACAAGATAGTGGACAGCTTATGTAGCAAACGCAAGAACCAACT TCTTTTGAACTCACTATCTACTGAAGAGTCCTCCCTCATTGCGGATGACAATGGGCACGATGACCTTGATTTAAGGATTGCGAGTGTCCTTCAAAGTACA GGGCATCATTATGAAGGTGGATTCTGGACAGATCAAGCAAAACATATCCCATTAGATGGTACGCGGCATGTCGCTATTGTCACAACTGCTAGTCTTCCAT GGATGACTGGAACAGCTGTCAATCCACTTGTCCGAGCAGCATCCAGGAAAGTTGTCCACACAAATTACCTGGAATATATCAAGAGGGAGAAGCATGGAGC TCTCCAAGCTTTCCTTGTTAAACACATAAACAATTGGGTTGCACGAGCATACTGCGATAAGGTTCTTCGCCTTTCTGCTGCTACACAGGATATGCCAAAG TCCGTAGTGTGCAATGTGCATGGTGTAAATCCTAAGTTCTTGCGAATAGGTGAAAAGGTTGCTGCAGACGTGGAACTTGGACAGCATGCCTTCTCTAAAG GAGCCTACTTCTTGGGCAAGATGGTCTGGGCTAAGGGATACAGAGAGTTGATAGATCTGCTGGATAAACACAAGAGTGATCTTGATGGCTTCAAGTTGGA TGTATACGGAAATGGTGAGGATGCACATGAAGTTAAGAGTTCAGCTCAATCATTGAATTTAAATCTCAATTTTCTCAAAGGAATCGATCATGCTGATGAT TCTCTCCACAGGTATAAAGTTTTCATAAATCCAAGTCTCAGCGATGTCCTCTGCACAGCCACAGCCGAGGCACTAGCGATGGGGAAATTCGTTGTGTGTG CAGACCACCCATCGAACGAGTTCTTCAGATCGTTCCCGAACTGTTTGACCTATAAAACTCCCAAGGACTTTGTAGCAAAGGTGAAGGAAGCAATGGAGAA AGAACCTCAACCCCTCACTCCAGAACAAAGCTACAATCTCTCCTGGGAAGCTGCCACACAGAGATTCATGCAGTACTCCGATCTCGACAAACTGCTGACC GATGGCAAAGATGGTACGTTATCGAAAGAGAGCAGGATCATAAAAGGAAGTCCAGTGCCAAATATCTCCGAGGTACTCGATGGAGGACTGGCATTCGCGC ACTACTGCCTCACCGGTAATGAGTTCCTTCGATTGTGTACCGGTGCCACACCAGGAACGAGGGACTATGACAAGCAGCACTGTAAGGACCTGCGGCTGTT GCCTCCGCATGTGGAGAACCCAATTTATGCATCCAATGTATCTGAAACCCTAATCCAACTAACCTGGACTCCTTCACGTCCAGATCTGAATGACCTTCTT CCACAAGTCCAAGATGAGTTCAAAACAGTGGTTCATGTGACGCCCATTTTCCGTAATTGGAATGATGGTTGCAAATCAAACTTACTATCTGCAATTGGGT TTCACATTACTGCTACAGTGAACCTGAATTCTGAAGAGTGGGTTTTTGCACATGTGATCCCCATTTCATCTTTTTACAAAGCCCCCTCAGCCATTTCTGA CTTAACCCTAGGGATCTACAATGGGAATCTGGCATGGGAAGGGAATGTTCTCTTCTTTCACCCATTTGTTTAA
AA sequence Show only first row Show all	>Lus10013576 pacid=23168745 polypeptide=Lus10013576 locus=Lus10013576.g ID=Lus10013576.BGIv1.0 annot-version=v1.0 MRQSFTIRSSSSSSSSSSTDAFSFISKGWREVRDSADADLQLMRARAKSFKNLASSFDRELENFFSSAATPSESDFVKRIQPKLTEFRRVYSAPEISKKV LEKWEPTKAKLGIDLSSIRNALVSEVEGYDGDVDRSVEFDRVWRGRRRLKFNEFWGEWKVEGEGNQIEEWKPIRDLKRRFKELEKKSELGEIIEGFKNGE IVEKVKSSLKSICKDPQESQEVPPLDVPELLASLVKQSGPFLDQLGVRRDICDKIVDSLCSKRKNQLLLNSLSTEESSLIADDNGHDDLDLRIASVLQST GHHYEGGFWTDQAKHIPLDGTRHVAIVTTASLPWMTGTAVNPLVRAASRKVVHTNYLEYIKREKHGALQAFLVKHINNWVARAYCDKVLRLSAATQDMPK SVVCNVHGVNPKFLRIGEKVAADVELGQHAFSKGAYFLGKMVWAKGYRELIDLLDKHKSDLDGFKLDVYGNGEDAHEVKSSAQSLNLNLNFLKGIDHADD SLHRYKVFINPSLSDVLCTATAEALAMGKFVVCADHPSNEFFRSFPNCLTYKTPKDFVAKVKEAMEKEPQPLTPEQSYNLSWEAATQRFMQYSDLDKLLT DGKDGTLSKESRIIKGSPVPNISEVLDGGLAFAHYCLTGNEFLRLCTGATPGTRDYDKQHCKDLRLLPPHVENPIYASNVSETLIQLTWTPSRPDLNDLL PQVQDEFKTVVHVTPIFRNWNDGCKSNLLSAIGFHITATVNLNSEEWVFAHVIPISSFYKAPSAISDLTLGIYNGNLAWEGNVLFFHPFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10013576 [exp]	0	1
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Lus10021273 [exp]	5.4	0.8174
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	12.4	0.7768
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10026801 [exp]	18.0	0.7644
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10029716 [exp]	18.9	0.8162
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	24.1	0.7865
AT5G59400			unknown protein		Lus10040799 [exp]	25.5	0.7792
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10019821 [exp]	28.3	0.7881
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10006804 [exp]	29.0	0.7819
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	38.1	0.7767
AT2G20830			transferases;folic acid bindin...		Lus10018558 [exp]	39.2	0.7606

Compare expression of checked genes

Lus10013576 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.