Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11680 523 / 0 Aluminium activated malate transporter family protein (.1) AT1G08440 453 / 3e-156 Aluminium activated malate transporter family protein (.1) AT1G08430 436 / 1e-149 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT2G27240 423 / 3e-144 Aluminium activated malate transporter family protein (.1) AT4G00910 347 / 1e-114 Aluminium activated malate transporter family protein (.1) AT4G17970 288 / 5e-91 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 283 / 3e-89 Aluminium activated malate transporter family protein (.1.2.3) AT5G46600 270 / 2e-84 Aluminium activated malate transporter family protein (.1) AT3G18440 231 / 4e-69 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G18420 225 / 6e-67 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021272 [exp] 914 / 0 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001846 [exp] 395 / 4e-134 AT2G27240 413 / 6e-141 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 385 / 3e-130 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 350 / 2e-116 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 347 / 1e-114 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1) Lus10004556 [exp] 290 / 6e-92 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 278 / 2e-87 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10030975 [exp] 275 / 2e-86 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013347 [exp] 237 / 8e-74 AT3G11680 232 / 6e-72 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G070100 [exp] 606 / 0 AT3G11680 507 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 598 / 0 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1) Potri.016G070000 [exp] 584 / 0 AT3G11680 463 / 2e-160 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 522 / 0 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217200 [exp] 502 / 7e-176 AT2G27240 445 / 6e-153 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 497 / 8e-174 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217050 [exp] 476 / 1e-165 AT2G27240 457 / 9e-158 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 466 / 1e-161 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.001G217300 [exp] 451 / 7e-156 AT1G08440 407 / 2e-138 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 369 / 2e-123 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10013577 pacid=23168740 polypeptide=Lus10013577 locus=Lus10013577.g ID=Lus10013577.BGIv1.0 annot-version=v1.0 ATGGAGATTGATTCAGCATCAACCGGCCAAGACAAACCAGGGCTTTTCGGCCGCGGTTGGTCCATGGTCAAGGACAAAGTCACCAGTGTCTCAAAGGGTG CCATCAAAGTTGGACAAGATGATCCTAGAAGGATCATCCATTCCCTTAAAGTTGGGCTGTCACTCACATTGGTTTCCTTACTCTACTACATTAGGCCATT GTATGATGGGTTTGGAGTTGCAGGAATGTGGGCTGTGCTTACTGTTGTAGTCATCTCTGAGTTTACAGTTGGTGGAACTTTGTCCAAAGGGTTGAATAGA GGATTTGCAACTCTGTTTGCTGGTGCTCTAGGAGTCGGAGCTCAGCACTTGGCTGCTTTGTCTGGACATAAAGGAGAGCCGTTTGTACTTGGAATCCTTG TTTTCCTATTAGCTTCAACATCCACATTCATGCGATTCTTCCCGAGGATCAAGGCGAGATATGACTACGGAGTACTGATCTTCATCCTGACATTTGCGTT GGTCTCCGTATCTGGTTATCGAGTTGAGGAGATCTTGACTCTAGCAGAGCAAAGATTGGTGACAATCATAATTGGTGGAGCAACCTGCATGGTTGTGTCC ATTTGCATTTGCCCTGTATGGGCTGGTGAAGATCTTCACAAGTTGGTCTCTTCTAACATTGAAAAGCTTGGCTGCTACTTGGAAGGATTTGCAGGAGAAT ATTTTCAGTCCCGTGAAGATGGAGAAATTGCTGCTGTTTCCAAGCCATTTCCTCAAGTATACAAATCTGTCCTCACTTCCAAGTCTACTGAAGACACTTT GGCAAACCTTGCAAGATGGGAGCCAAGGCATGGTCAGTTCAGGTTGAAGCATCCATGGAAGCACTACTTGAAGACTGCAGCAGCTGCAAGGCAGTGTGCT TATCAGATTGAATCTCTTAATGGATACATTCACTCTGGACTCCAGACACCAAAAGAGTTCCAGAACAAGATCAAGGAATCATGCACCAGGATGAGTGGAG AATCAGGGATGGCACTGAGATCACTAGCATCATCCATGAAGTCAATGACCGATCCATCTCCAGCAAATTTTCATGTCGAGAACTCAAAAGCTGCCATGAA CGACCTCAAAGTCGCTCTCAAAGCCGTCTCAATGGATCAAGCAGATTTCTTGGCAATTGTACCCGCTGCCACAGTTGCATCTATACTAGCAGAGACAGTG AAGTCTGTGGAGAAGCTGGCTGAATCTGTTCATGAGCTTGCTAATCTAGCCCACTTCAAAGGCCTGAAAGCTACCGTATCACCGGAGATTAAACAGGCAC AATTTCTCCACAGAGGAAGTGTAAAGCCAGTTTTGTATGGTAATGATGCAGATCATGTTGTAATTACAGTCCTTGAAAGTCCTGCAGAATCATCACAAAC TGTCAAGTCTAATGGTGTAGCTGGACATATCTCAGAAGTGAAATAA
AA sequence Show only first row Show all	>Lus10013577 pacid=23168740 polypeptide=Lus10013577 locus=Lus10013577.g ID=Lus10013577.BGIv1.0 annot-version=v1.0 MEIDSASTGQDKPGLFGRGWSMVKDKVTSVSKGAIKVGQDDPRRIIHSLKVGLSLTLVSLLYYIRPLYDGFGVAGMWAVLTVVVISEFTVGGTLSKGLNR GFATLFAGALGVGAQHLAALSGHKGEPFVLGILVFLLASTSTFMRFFPRIKARYDYGVLIFILTFALVSVSGYRVEEILTLAEQRLVTIIIGGATCMVVS ICICPVWAGEDLHKLVSSNIEKLGCYLEGFAGEYFQSREDGEIAAVSKPFPQVYKSVLTSKSTEDTLANLARWEPRHGQFRLKHPWKHYLKTAAAARQCA YQIESLNGYIHSGLQTPKEFQNKIKESCTRMSGESGMALRSLASSMKSMTDPSPANFHVENSKAAMNDLKVALKAVSMDQADFLAIVPAATVASILAETV KSVEKLAESVHELANLAHFKGLKATVSPEIKQAQFLHRGSVKPVLYGNDADHVVITVLESPAESSQTVKSNGVAGHISEVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11680			Aluminium activated malate tra...		Lus10013577 [exp]	0	1
AT2G31690			alpha/beta-Hydrolases superfam...		Lus10025519 [exp]	1.0	0.8092
AT5G65890		ACR1	ACT domain repeat 1 (.1.2)		Lus10011715 [exp]	5.1	0.7810
AT3G43660			Vacuolar iron transporter (VIT...		Lus10015135 [exp]	8.1	0.6797
AT2G31960		ATGSL3, ATGSL03	glucan synthase-like 3 (.1.2)		Lus10003917 [exp]	10.6	0.7470
AT3G24330			O-Glycosyl hydrolases family 1...		Lus10017740 [exp]	11.2	0.7480
AT5G08350			GRAM domain-containing protein...		Lus10010167 [exp]	11.4	0.7412
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10021828 [exp]	16.2	0.7003
AT2G38890			unknown protein		Lus10023488 [exp]	17.3	0.6858
AT1G15000		SCPL50	serine carboxypeptidase-like 5...		Lus10013446 [exp]	17.7	0.6594
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Lus10003598 [exp]	22.4	0.7231

Compare expression of checked genes

Lus10013577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.