Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16480 1036 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G27610 531 / 1e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 535 / 1e-172 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 524 / 3e-169 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 509 / 1e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 506 / 7e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 491 / 4e-159 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 489 / 2e-157 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 487 / 2e-157 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 484 / 1e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033685 [exp] 1781 / 0 AT1G16480 962 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018978 [exp] 559 / 0 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 556 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 555 / 0 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 552 / 2e-180 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 550 / 8e-180 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035164 [exp] 533 / 1e-174 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 521 / 4e-170 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001220 [exp] 510 / 2e-165 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G068600 [exp] 1191 / 0 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G047800 [exp] 582 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 570 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 566 / 0 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 551 / 2e-180 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G184800 [exp] 540 / 6e-177 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 536 / 2e-176 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 525 / 3e-172 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 519 / 6e-169 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 523 / 8e-168 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10013578 pacid=23168736 polypeptide=Lus10013578 locus=Lus10013578.g ID=Lus10013578.BGIv1.0 annot-version=v1.0 ATGCTTCCATCCGTCGCACTTCCACCTCTCCCTCGAATCCGCTGCGAATCCACCGTCACAACCCGTCTCCGACTCCAACCTCACCTTCACCACGCCGTCG CGGCGCGCCCTCTCCTCCTCTCTCCTCTTCTCCTCCGCACCGTTGCAGCCCCGCCTCATCCGCTGCTCCCTTCTTCTTTGCCGAGCCGTCGCGGCGGCAG CCTATCGGCTTCATCCTCTTCTCCCTTTTTCTCCGCCGCTAAGGCTGTTGTGAGACGCGGATGTTCCTCCGACCGGGCTGTTCTGATCCTCCGTCAGTCT AAGCTGTTTCTCTGTTCAAATCCTGAATCTAAGCACCTCTCTTCAAAACGTGAAGGAAGCGAAAGAACAGCACATGAACACAACGTTGATGAATGCGTTG CTCCTCCTACATGCGGAAGATGGCCGGAAGGTGGGTTCGTGTCTATTGCAGACCACCGGAACCCAGAGGTGTCTTGCTTCCAGCAGAAGGGATTCTCCCT GATCACGAGACAAGTTACTGGCAAAGCGCTGCACGCTCTTTGCATCAAGGGGCTAATCAATCTGGGTGTCTTTTACAGCAACACGTTGATTAGTATGTAC TCGAGGTTTGGCCACATTGGTCATGCTCGCTACGTGTTTGATACAATGCGTGATAGAAACGAGTCGGCATGGAATAATATGATGTCTGGCTCTGCTTTCG TCTTGGTTACTCCACCCGTGCATTTCTATGGAAGTTATGACTTGGCTGTTAGTGCCAAGCGGCTTTTCGAAGAGATGCCGGATAAAAATGTAGTGTCTTG GACAGCATTGATGGTTGCTTTTGCTGATCATGGAGATCCGAGGGAAGTGATGAAATTGTATCAACGTATGAGGAATGAAGGGGTGAGTTGTACAAGCAAC ACACTTGCGACTGTGGTTAGTTCGTGTGGATCACTTGAAGATGGACATCTCGGTCTTCAAGTTCTTGCACATATTATGAAGACTGGGCTAGAAACGGGTC CTTCTGTAGCAAACTCTCTCATATCGATGTTTGGAAATAACGGGAGAGTGGAAGAGGCTACTTATGTTTTCGATTGCATGACTGAACGGGACACCATCTC ATGGAACTCGATTATTACAGTGAATGTACATAATGGCTTTTTTGAAGATGCGCTGAAATATTTTAATTGGATGCGTCTTGACCATGACAAGGTTAATTAT ACTACATTATCGGCATTGTTGTCTGGCTTCTGTTCTGTGGATAATGCACAATATGGTCAAGGAATTCATTGTCTAGCTACTAAATTAGGGCTAGATTGTG ATCTTTTTGTGTGCAACAGCCTTATACGTATGTATACCACAGCCGGTAAGAATGCAGAAGCAGAAAATGTCTTCCACGGCATGGGAAGCAAGGATTTGAT TTCTTGGAATTCCATGATGGTCTGCTATGCCGAGGATGGGAAGTGTAGAGATGCCTTGAGGGTTTTTAACCATATCCTTAATACAATGAAAGCAGTTAAC TATGTTTCTTTTACAATTGCAGTTGGGGCTTGTGCCGATCCTGATTATGTTAGTGTAGGTAAAGTTATTCATGGCCTCATAATTCTGACAGGTCTGAGTG AAAACTTGATAGTAGGTAATGCACTAGTGACCTTGTATTGTAAGTCTGGTTTGATGACTGAAGCAAGAAAGGTATTCCAAACAATGCCCAGGAGGGATGT AGTGGCCTGTAACGCACTTATTGGTGGTCATGCAGACAACGACGAGGTAGAAGAAGTCTTTGAAATTTTTAAGTTTATGAGAAGGGAAGGTATGGAAGTG TCCTATATCACTATCTCTAGTGTTCTTGGTGCATGCGTCGCTGCTATTGATCTATCTAAACATGGGATGGCTACCCATGCTTACATTGTTCAGACAGGCT TTGAGTCAGATGAATATGTCCACAGTTCGCTTATATCTATGTATGCCAATTGTGGTGATATCGACTCAAGTTTTCGTACCTTTGAGGGAATAGCTAATAA GAAGAATGCTGCGTGGAATACTCTTATAACAGCGAGTGTTAACCATGGCTACATAGAAGAGGCTTTGAAACTTTTTTCGGACATGAGACGTGCGGGAATA AGATTAGATCATTTTAGTATTTCTGAATGCCTAGCTGCTACTGCTCAGTTGGCGATATTAGAGGAAGGCCAGCTGCTACATGGTTTGGCCATCAAACTTG GTTTGGAGTTGGACCCTTTCGTAGCAAATGCAACTATGGACATGTATGGAAAAAGTGGAGAGTTAGAGGATGTGGTAAAAATGATCTCTTTATCAACTGA AAGGTCACGATTATCATGGAATATTTTGATATCATCATTTGCCAAGCATGGGTGCTTCACGAAGGCCATTGAAACTTTTCATGAAATGCTTCGGCTCCAA GTGAAGCCAGATCATGTCACGTTTGTTTCTCTTCTTTCCGCATGCAGTCATGGCGGTCTAGTGGAAGAAGGCCTTAGGTACTACGATGTAATGACTAAGG AGTTCAATATTTTGCCTCGAATTACACATTGTGTATGCATGATCGACCTTCTTGGAAGATCGGGGAGGCTTGATGAGGCTGAAACTTTTATCGCGGAAAT GCCAATTCCACCAACGGACTTTGTCTGGAGGAGTCTGTTGGCAGCTTGCAAGGTCCATGGGAATGTGCAACTCGGGAGAAAAGCTGCAGAAAATCTTATA GCCTTGGACCGGTTTGACGATTCAGCTTACGTACTTTATTCCAATGTTTGTTCAACCAGTGGGAGATGGAGGGATGCTGAGAATGTAAGGAGTCGGATGG GGTCAAACAGAGTGCAGAAGCAGCCTGCCTGCAGTTGGGTTAAGTTAAAGAACCAAGTTTGCTCATTCGGAGTTGGGGAGAAGTCACACCCACAGTCAAG AGATATATATAAGAAGCTGGATGAGATAAAGATAATGATCAGAGAAACAGGCTATGTCCCAGATACTAGCTACTCTTTGCAAGACACGGATGAAGAACAG AAGGAACATAATCTGTGGAACCACAGTGAAAGATTGGCACTTGCATTTGCCTTGATCAACACCCCAGAGGGTTCAGCTATCAAAGTTTTCAAGAACCTTC GTGTTTGTGGAGATTGCCATTCTGTTTTCAAATTTGTAAGTGGAATTCTTGGTCGGAAGATCATACTGAGAGATGCATTTCGCTTTCACCACTTCACAGG TGGCAGCTGTTCTTGCTCTGACTACTGGTGA
AA sequence Show only first row Show all	>Lus10013578 pacid=23168736 polypeptide=Lus10013578 locus=Lus10013578.g ID=Lus10013578.BGIv1.0 annot-version=v1.0 MLPSVALPPLPRIRCESTVTTRLRLQPHLHHAVAARPLLLSPLLLRTVAAPPHPLLPSSLPSRRGGSLSASSSSPFFSAAKAVVRRGCSSDRAVLILRQS KLFLCSNPESKHLSSKREGSERTAHEHNVDECVAPPTCGRWPEGGFVSIADHRNPEVSCFQQKGFSLITRQVTGKALHALCIKGLINLGVFYSNTLISMY SRFGHIGHARYVFDTMRDRNESAWNNMMSGSAFVLVTPPVHFYGSYDLAVSAKRLFEEMPDKNVVSWTALMVAFADHGDPREVMKLYQRMRNEGVSCTSN TLATVVSSCGSLEDGHLGLQVLAHIMKTGLETGPSVANSLISMFGNNGRVEEATYVFDCMTERDTISWNSIITVNVHNGFFEDALKYFNWMRLDHDKVNY TTLSALLSGFCSVDNAQYGQGIHCLATKLGLDCDLFVCNSLIRMYTTAGKNAEAENVFHGMGSKDLISWNSMMVCYAEDGKCRDALRVFNHILNTMKAVN YVSFTIAVGACADPDYVSVGKVIHGLIILTGLSENLIVGNALVTLYCKSGLMTEARKVFQTMPRRDVVACNALIGGHADNDEVEEVFEIFKFMRREGMEV SYITISSVLGACVAAIDLSKHGMATHAYIVQTGFESDEYVHSSLISMYANCGDIDSSFRTFEGIANKKNAAWNTLITASVNHGYIEEALKLFSDMRRAGI RLDHFSISECLAATAQLAILEEGQLLHGLAIKLGLELDPFVANATMDMYGKSGELEDVVKMISLSTERSRLSWNILISSFAKHGCFTKAIETFHEMLRLQ VKPDHVTFVSLLSACSHGGLVEEGLRYYDVMTKEFNILPRITHCVCMIDLLGRSGRLDEAETFIAEMPIPPTDFVWRSLLAACKVHGNVQLGRKAAENLI ALDRFDDSAYVLYSNVCSTSGRWRDAENVRSRMGSNRVQKQPACSWVKLKNQVCSFGVGEKSHPQSRDIYKKLDEIKIMIRETGYVPDTSYSLQDTDEEQ KEHNLWNHSERLALAFALINTPEGSAIKVFKNLRVCGDCHSVFKFVSGILGRKIILRDAFRFHHFTGGSCSCSDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10013578 [exp]	0	1
AT5G19350			RNA-binding (RRM/RBD/RNP motif...		Lus10027373 [exp]	2.0	0.9248
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10025420 [exp]	3.7	0.9170
AT1G47710			Serine protease inhibitor (SER...		Lus10005089 [exp]	15.4	0.9274
AT4G02120			CTP synthase family protein (....		Lus10025042 [exp]	15.7	0.9174
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10036324 [exp]	18.8	0.9220
AT1G27150			Tetratricopeptide repeat (TPR)...		Lus10037232 [exp]	25.9	0.9227
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	29.0	0.8923
AT5G06130			chaperone protein dnaJ-related...		Lus10021316 [exp]	29.8	0.9134
AT4G13400			2-oxoglutarate (2OG) and Fe(II...		Lus10033085 [exp]	30.8	0.9204
AT4G02120			CTP synthase family protein (....		Lus10010020 [exp]	34.3	0.8964

Compare expression of checked genes

Lus10013578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.