Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35940 399 / 6e-132 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT2G16400 277 / 6e-87 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G34610 268 / 6e-83 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT1G19700 258 / 4e-79 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT1G75410 254 / 7e-78 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G27220 240 / 2e-73 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT4G36870 246 / 7e-73 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT2G23760 242 / 4e-72 HD BLH4, SAW2 SAWTOOTH 2, BEL1-like homeodomain 4 (.1.2.3) AT5G41410 231 / 2e-68 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT1G75430 200 / 8e-60 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004201 [exp] 389 / 1e-127 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10029405 [exp] 380 / 2e-124 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10021270 [exp] 237 / 4e-98 AT2G35940 127 / 2e-65 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10028802 [exp] 282 / 1e-86 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 281 / 2e-86 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10000184 [exp] 280 / 4e-86 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 251 / 9e-76 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10033192 [exp] 243 / 6e-73 AT1G75410 342 / 6e-111 BEL1-like homeodomain 3 (.1.2) Lus10016790 [exp] 228 / 1e-68 AT4G36870 371 / 2e-121 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G203000 [exp] 419 / 2e-139 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 404 / 8e-134 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 332 / 3e-105 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G216600 [exp] 329 / 4e-104 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.004G159300 [exp] 303 / 1e-94 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 294 / 2e-91 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 277 / 5e-85 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1) Potri.003G131300 [exp] 260 / 9e-79 AT5G41410 434 / 2e-144 BELL 1, POX (plant homeobox) family protein (.1) Potri.001G100800 [exp] 259 / 2e-78 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.007G032700 [exp] 258 / 1e-76 AT4G36870 475 / 7e-157 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07526 [flax] [poplar] POX Associated with HOX CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10013579 pacid=23168748 polypeptide=Lus10013579 locus=Lus10013579.g ID=Lus10013579.BGIv1.0 annot-version=v1.0 ATGACGACATACTTCCATGGCGGCAACCCTGCTGAAATCCAAACTGAAGGTCTCCATACCCTCCTCCTTATGAACCCTACCTACGTCCACCACTACTCCG ACCACGACGTCAGCCCTCCTCCGCCACCTCACCACTTCTCCTCCGGCCATCACCACCAGCAGTTCGTCGGCGTCCCTCTAGACCCTCACCACTACAACAG CCTCTACAGCCCTGTCGACCTCTCCTCCGACACGCGAGCTTCCCCACGCGCCTCCCACCACCACCACCACCAGCAGGCTCTCTCCTTGACTCTCTCCTCC CACCAGCAGCACCGTCAGCAGCACCAGCAGGTTTCGTCGAGTTCTGGTGGAGTGACCGTGAATTGCGGTGCCGGCGTGGTCCCTACCGCCGCTGGCGTGC TGTCGAGCTCCAAGTACTTGAAAGCTGTTCAGGAGTTGATCGACGAAGTCGTTAACGTCAACGTCAACGTCAACGTTAACGGGGGAGTTGGTAATGGCAG GACCGAAGCGTCAAAGACAGGGAATACTAATAACGCCGTCACCAAGGAGGCGGAGTCAGCTGCCTCCGGCTATGGGAAGCTATCGCCGGAGCTTACGACT GCAGAGAGGCAGGAGGTTCAGATGAGGAAAGGCAAGCTGATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACAATCACCAGATGCAGGCGG TGATATCGGCGTTCGAGCAAGCGGCGGGGACGGGATCTGCGAGGACCTACACGGCGCTGGCTTTGCAGACGATCTCTAGGCAGTTCAGGTCGTTGAAAGA CGCTATCGCCGGCCAAATCAAGGCGGCGAACAGGAGCTTAGGGGAAGAGGAAACTCCGCGGAAGATGGAAGGTTCGAGGCTGAAATTCGTGGATCATCAT CTCCGGCAGCAGCGGGCTCTTCAGCAGATTGGAATGATGCAGCACAACGCTTGGAGACCTCAGAGAGGCTTGCCTGAGAGATCCGTCTCCGTCCTCCGCG CCTGGCTCTTCGAACACTTCCTCCACCCATATCCCAAGGATTCTGACAAGCATATGCTAGCCAAACAGACGGGACTCACCAGGAGCCAGGTCTCGAATTG GTTCATCAATGCTCGAGTTCGGCTGTGGAAGCCCCTGGGGGGAGAAATGTACATTGAGGAAAAGGAAGAAAAACCTAGGAACCACCAAATCGACCTACCG AGCGTTCCATCGATGGATCAGTCGAGCAACAACGATCACAATTCGATAGAGTTTGTAGACGAGCGGCAGAGCAGAGATGGGTACTCGTTCATGGGCGGCC AGACAAACTTCATGGGAGCAGCATTTGGGCAGTACCCAATTGCAGAAATTGGTGCAAGGTTTGATGCAGACCAGTTCGCTCAGAGGTTCTCTGGCAATGG AGTCTCACTAAGCCTCGGCCTCCCACATTGCGAAAACCTCAACTTATCAGGCAATCACCACACTTTTCTACCCAACCACAACATCCAGCCAAGGAGGAGA CTTGACATGGGAGATGCAAACGAGTTCGGAGCCATTAACGGGTCGGATCCACACTCGTCGACAACAACATATGAGAGTATCAACATCCAGAACAGGAAAG GGTTTGCAGCAGCACAGCTATTGCCTGATTTTGTAACTTGA
AA sequence Show only first row Show all	>Lus10013579 pacid=23168748 polypeptide=Lus10013579 locus=Lus10013579.g ID=Lus10013579.BGIv1.0 annot-version=v1.0 MTTYFHGGNPAEIQTEGLHTLLLMNPTYVHHYSDHDVSPPPPPHHFSSGHHHQQFVGVPLDPHHYNSLYSPVDLSSDTRASPRASHHHHHQQALSLTLSS HQQHRQQHQQVSSSSGGVTVNCGAGVVPTAAGVLSSSKYLKAVQELIDEVVNVNVNVNVNGGVGNGRTEASKTGNTNNAVTKEAESAASGYGKLSPELTT AERQEVQMRKGKLINMLDEVEQRYRQYNHQMQAVISAFEQAAGTGSARTYTALALQTISRQFRSLKDAIAGQIKAANRSLGEEETPRKMEGSRLKFVDHH LRQQRALQQIGMMQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPLGGEMYIEEKEEKPRNHQIDLP SVPSMDQSSNNDHNSIEFVDERQSRDGYSFMGGQTNFMGAAFGQYPIAEIGARFDADQFAQRFSGNGVSLSLGLPHCENLNLSGNHHTFLPNHNIQPRRR LDMGDANEFGAINGSDPHSSTTTYESINIQNRKGFAAAQLLPDFVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10013579 [exp]	0	1
AT4G23990		ATCSLG3	ARABIDOPSIS THALIANA CELLULOSE...		Lus10023057 [exp]	1.4	0.8453
AT5G59050			unknown protein		Lus10001433 [exp]	2.0	0.8507
AT5G45820		PKS18, CIPK20, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10034212 [exp]	3.0	0.8388
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	4.0	0.8337
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10034183 [exp]	5.1	0.7895
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	5.7	0.7957
AT1G69640		SBH1	sphingoid base hydroxylase 1 (...		Lus10037183 [exp]	6.0	0.7931
AT1G13990			unknown protein		Lus10037142 [exp]	8.1	0.8208
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10037218 [exp]	9.9	0.7910
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10043097 [exp]	10.4	0.7904

Compare expression of checked genes

Lus10013579 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.