Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05675 397 / 6e-136 BTB/POZ domain-containing protein (.1.2) AT4G10800 155 / 4e-44 unknown protein AT3G50780 47 / 2e-05 unknown protein AT3G19920 43 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021269 [exp] 781 / 0 AT3G05675 439 / 4e-152 BTB/POZ domain-containing protein (.1.2) Lus10033220 [exp] 258 / 2e-81 AT3G05675 346 / 6e-116 BTB/POZ domain-containing protein (.1.2) Lus10023030 [exp] 254 / 5e-80 AT3G05675 348 / 2e-116 BTB/POZ domain-containing protein (.1.2) Lus10023573 [exp] 59 / 3e-09 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1) Lus10040458 [exp] 59 / 3e-09 AT1G63850 84 / 5e-17 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 52 / 6e-07 AT3G50780 602 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202900 [exp] 469 / 5e-164 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 268 / 2e-85 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2) Potri.003G144700 [exp] 168 / 9e-49 AT4G10800 265 / 2e-88 unknown protein Potri.016G069566 [exp] 89 / 1e-21 AT3G05675 86 / 5e-21 BTB/POZ domain-containing protein (.1.2) Potri.003G131000 [exp] 52 / 5e-07 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G100900 [exp] 51 / 1e-06 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 48 / 1e-05 AT3G50780 654 / 0.0 unknown protein Potri.004G154600 [exp] 46 / 5e-05 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 45 / 7e-05 AT3G50780 623 / 0.0 unknown protein Potri.016G069632 [exp] 0 / 1 AT3G05675 0 / 1 BTB/POZ domain-containing protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013580 pacid=23168713 polypeptide=Lus10013580 locus=Lus10013580.g ID=Lus10013580.BGIv1.0 annot-version=v1.0 ATGCAGGGAATTGGTAACATCGGTGACCGATTAACTAGTGATCTCGTTGTCAGGCTACGGACAGATAGTGGCAGAGACGAGTGGCTTTACTGTCACTCTA CTGTCCTAATCGAGAAATGCAAATATTTTGCTGACCGCCTTTCTGAGAGTTGGCCCACTTTGCAGATCATTGATTCTCGGAACTGCGTTGATGTCTTCTG CCAAGACTCAGATATTGATCACTATGTCAATCTCCTCCGCCTGCTATATGTAGTTTCTGATGACCCATTGGAGTGCATTCCCCATGGTGTGGGGAACGTG CTCGGCATTCTACAGGTAGCAGTTAAACTTGGCTGCACAAAATTTGTTCCTGCTTGTGTGCACTACTTAGAAGCAGTCCCATGGGAGGAAGCCGATGAAG AGGAAATCTTAAAGATCGTACCAGGATTTGGTTCACAAGCAGAAGCAATTCTTTGTCGTCTCCAGCCAGTCGATAAATCAAAACTGGAAAGGATGTTTTT GTCCGCTGTTCAGTTTGCCACATCATTGCCTGCTCTGGACTTGAATCATGTCAAAGCTTCCGCGCAGGATCAGATTGAGTACATGCTAACGGAGGAAGAT GATGATGAACCTCTTTTGACTCCTGATGATGAGATTGCATCTGTCCTGAGAGATTCTATGGATGGATTGTTCTCGGAATTCGGCAATAGGTTGGATGCCT TGCTACAAATGCCGTTGCTGTCAATTTCCGAGGGAAATGAGATGAAACTATTAGAGTCACATCTTTCAGATCTTGCTTGGGCTTTTCAAATATTAAACAA GTTGGAAATGATGCCGGAATTCGTCAGACACTGGGTGGATGCGTCAGATAAGGCCCTTGAGATATTTGAGCGGCTGAACTCTGAAGATGGGATATTAGAG GCGAGTTTGAAGGCCATCGAGGTGTCCACAAAGGTCTTAGAAGCAATTTCGTACGGAACTGTCATATTACCTACTCAGACACGTCTTCACATCGTGAAGA TATGGCTTCCATTCACAAGGGAAACAAGAAACGCAACCGATAATGCCAGCAGCAACACCACGGAGAATCAGAAGGTTAAACTGGATGGTGAAGTGTGGCA GACCCTGGAATCTTCATTTGTGTCAATAGTTCAGGGACTGCCGTCAGAAGATCAAGCAGAGATCATCGTCGAATGGCTATCGAGTGCACACATTCGGTAT CCAGATTTGAGAGAGGCATTCGAGATGTGGTGTCTCAGAGCTAGGATGGCTAAGAAAAGGTTTGGAAGTAAAAGTGGGAATCCTAGTGATGGAGTTTCTG GCCAAGTGAGCATGGATGATGCACTTGCCTGA
AA sequence Show only first row Show all	>Lus10013580 pacid=23168713 polypeptide=Lus10013580 locus=Lus10013580.g ID=Lus10013580.BGIv1.0 annot-version=v1.0 MQGIGNIGDRLTSDLVVRLRTDSGRDEWLYCHSTVLIEKCKYFADRLSESWPTLQIIDSRNCVDVFCQDSDIDHYVNLLRLLYVVSDDPLECIPHGVGNV LGILQVAVKLGCTKFVPACVHYLEAVPWEEADEEEILKIVPGFGSQAEAILCRLQPVDKSKLERMFLSAVQFATSLPALDLNHVKASAQDQIEYMLTEED DDEPLLTPDDEIASVLRDSMDGLFSEFGNRLDALLQMPLLSISEGNEMKLLESHLSDLAWAFQILNKLEMMPEFVRHWVDASDKALEIFERLNSEDGILE ASLKAIEVSTKVLEAISYGTVILPTQTRLHIVKIWLPFTRETRNATDNASSNTTENQKVKLDGEVWQTLESSFVSIVQGLPSEDQAEIIVEWLSSAHIRY PDLREAFEMWCLRARMAKKRFGSKSGNPSDGVSGQVSMDDALA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05675			BTB/POZ domain-containing prot...		Lus10013580 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	1.0	0.9198
AT2G17900		ASHR1, SDG37	ASH1-related 1, SET domain gro...		Lus10029712 [exp]	1.4	0.9184
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	3.0	0.9023
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	3.9	0.9083
AT5G13240			transcription regulators (.1)		Lus10007961 [exp]	4.6	0.9150
AT1G73350			unknown protein		Lus10031897 [exp]	5.3	0.9096
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029004 [exp]	6.0	0.8969
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10030738 [exp]	7.3	0.9067
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	8.1	0.8963
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	8.4	0.8782

Compare expression of checked genes

Lus10013580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.