Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 169 / 1e-51 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 93 / 5e-23 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT2G27170 61 / 1e-11 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G62410 45 / 4e-06 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 44 / 8e-06 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G61460 39 / 0.0006 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021268 [exp] 190 / 2e-57 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 172 / 1e-50 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 171 / 1e-50 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10030681 [exp] 93 / 5e-23 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 93 / 7e-23 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10036169 [exp] 56 / 4e-10 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Lus10017012 [exp] 54 / 3e-09 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10027215 [exp] 43 / 2e-05 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 175 / 5e-52 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 93 / 4e-23 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.009G155200 [exp] 58 / 7e-11 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 43 / 2e-05 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 43 / 2e-05 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013581 pacid=23168709 polypeptide=Lus10013581 locus=Lus10013581.g ID=Lus10013581.BGIv1.0 annot-version=v1.0 ATGCCACCAACGAAACGATTCCGAGATATAAAACAGCTCTTTGGCGGTGAGAAAACAGTTGCGGCACTTGCTTTGCTTTTCGCTATCCACAGCTATTGCC CCTCGCCGTTTTTCATATTGGATGAAGTCGACGCTGCGCTGGATAACTTGAACGTTGCCAAAGTTGCAGGGTTCATTCGCGAGAATGGAGCAAGTGGTTT CCAGAGCATTGTGATCTCTCTTAAAGACAGGTTTTACGACAAGGCCGAAGCTTTGATCGGGGTATATAGAGATGCCGATCGAGGGTGCTCGAGAACTCTG ACGCCTCATCGGTTACCGCGAATAGTAATGAAGGTTTTGCAGCAAGTAGGGAGGGAGCTCTCTGTAAAATAG
AA sequence Show only first row Show all	>Lus10013581 pacid=23168709 polypeptide=Lus10013581 locus=Lus10013581.g ID=Lus10013581.BGIv1.0 annot-version=v1.0 MPPTKRFRDIKQLFGGEKTVAALALLFAIHSYCPSPFFILDEVDAALDNLNVAKVAGFIRENGASGFQSIVISLKDRFYDKAEALIGVYRDADRGCSRTL TPHRLPRIVMKVLQQVGRELSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013581 [exp]	0	1
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10042904 [exp]	3.0	0.9229
AT2G31730	bHLH		basic helix-loop-helix (bHLH) ...		Lus10041649 [exp]	7.1	0.9179
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10024580 [exp]	10.5	0.8972
AT3G54070			Ankyrin repeat family protein ...		Lus10038357 [exp]	11.2	0.9025
AT1G55200			Protein kinase protein with ad...		Lus10041608 [exp]	11.5	0.8967
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10023226 [exp]	11.8	0.9063
					Lus10027011 [exp]	12.7	0.8725
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	13.6	0.9066
AT1G07260		UGT71C3	UDP-glucosyl transferase 71C3 ...		Lus10027334 [exp]	13.6	0.8867
					Lus10040954 [exp]	14.3	0.9046

Compare expression of checked genes

Lus10013581 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.