Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 293 / 2e-91 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 56 / 8e-09 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT2G27170 45 / 3e-05 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G62410 44 / 9e-05 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021268 [exp] 411 / 2e-139 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10024895 [exp] 403 / 1e-132 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 402 / 2e-132 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10027215 [exp] 54 / 7e-08 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10036169 [exp] 49 / 2e-06 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 352 / 2e-113 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 62 / 9e-11 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.009G155200 [exp] 57 / 3e-09 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 51 / 4e-07 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 49 / 1e-06 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10013582 pacid=23168750 polypeptide=Lus10013582 locus=Lus10013582.g ID=Lus10013582.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTGAAAAATATGGAAGAGAATCTTCAACAGTTGAGAAATCGTGCACAGGAACTGAATTCACAGGAGGAGCAAACACGAGCAAGACTCGAAA AGATTCTCGACACTTGTGCTAAACAGAAAGAAGAGGTGTCAGGGTTGAAAAAGGAATTGCGTATGATACAAGATAAACATCAGGATAACAAGAGCAAGCA GCTAAACTTGAAGTCCAAAATCGGAGAAATAGACAAGCAATTGCGCAAACTGAAAGCTGATAGATTCGAGAATCAGAGGGACGGTCAGTTGTCCGAAACA GTGGAGACTCTCAAACGGCTCTTCCAGGGAGTTCATGGACGCATGACTGACCTTTGTAGACCAAAGTATGAGAAATATAATGGGGCCATCACTGTAGCCA TGGGAAGATTCATGGATGCTGTGGTGGTGGAGGATGAAAATACAGGAAAAGAATATATCAAGTACTTGAAACATCAGAGGCTTCCTCCTATGACCTTTAT ACCGCTAGAGTCGATTCGTATAAAGCCAATCCCTGAATGGATGCGTACTTTAGGGGGTACATCAAAGCTTGTCTCTGAAGTCATCGAATTCGATCCTGTG CTGAAGAAGGCTATAATTTACGCCGTTGGAAGTAGTATGGTTTGTGATGATCTTGATGAAGCAAAGAAACTCCGATGGGATGATGGAAATGGAGAGAGAA TTAGAGTTGTAACAGTCGACGGGACTCTCCTTACATAG
AA sequence Show only first row Show all	>Lus10013582 pacid=23168750 polypeptide=Lus10013582 locus=Lus10013582.g ID=Lus10013582.BGIv1.0 annot-version=v1.0 MEALKNMEENLQQLRNRAQELNSQEEQTRARLEKILDTCAKQKEEVSGLKKELRMIQDKHQDNKSKQLNLKSKIGEIDKQLRKLKADRFENQRDGQLSET VETLKRLFQGVHGRMTDLCRPKYEKYNGAITVAMGRFMDAVVVEDENTGKEYIKYLKHQRLPPMTFIPLESIRIKPIPEWMRTLGGTSKLVSEVIEFDPV LKKAIIYAVGSSMVCDDLDEAKKLRWDDGNGERIRVVTVDGTLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013582 [exp]	0	1
AT1G53050			Protein kinase superfamily pro...		Lus10033684 [exp]	9.6	0.7671
					Lus10000768 [exp]	11.0	0.7489
AT1G71140			MATE efflux family protein (.1...		Lus10028904 [exp]	12.8	0.6916
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	17.9	0.7639
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10011578 [exp]	18.2	0.7295
AT4G09760			Protein kinase superfamily pro...		Lus10028728 [exp]	18.9	0.7430
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	19.9	0.7416
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	21.2	0.7419
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	26.7	0.7329
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	30.3	0.7370

Compare expression of checked genes

Lus10013582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.