Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 393 / 8e-127 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 86 / 4e-18 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT5G62410 74 / 3e-14 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 74 / 6e-14 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 50 / 2e-06 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024895 [exp] 532 / 5e-180 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 528 / 2e-178 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10030681 [exp] 80 / 4e-16 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 79 / 1e-15 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10027215 [exp] 77 / 7e-15 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10021268 [exp] 49 / 4e-06 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10029476 [exp] 46 / 5e-05 AT5G15920 1172 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Lus10039590 [exp] 42 / 0.0005 AT5G15920 1175 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 408 / 9e-133 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 82 / 7e-17 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.001G125000 [exp] 79 / 7e-16 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 78 / 2e-15 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 54 / 8e-08 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G262600 [exp] 42 / 0.0004 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10013583 pacid=23168760 polypeptide=Lus10013583 locus=Lus10013583.g ID=Lus10013583.BGIv1.0 annot-version=v1.0 ATGCCTGCGCTAGTCTCCCGGGGCAGAATCCTCCGATTGGAGATGGAGAACTTCAAGTCCTACAAGGGCTTCCAGACAATCGGTCCTTTCAAGGACTTCA CCGCCATCATTGGCCCCAACGGATCCGGCAAGTCCAATTTGATGGACGCAATCAGTTTCGTCCTCAGCGTCCGTACCAGCCACCTCCGCGGTTCTCAGCT TAAGGATCTCATCTACGCTTTCGATGACAAGGAGAAAGAGCAGCAGAAATGTCGAAAAGCATTCGTGCGGCTGGTGTACCTTCTTGCTAACGGGGTCGAG CTTCACTTCACCCGCGGAATCACCACTGCTGGTGTGAGCGAGTACCGCATCGATGGCAATGTTGTTAATTGGGATGAATATGACGGCTACTTAAGGTCTC TGGGGATTCTCGTGAAGTCCACGATGAACGTCTTGGTTTTTCAGGGTGACGTGGAGTCTATTGTGTCCAAAAACCCCAAGGAGTGGACTGCTTTGCTTGA GCAAAGTTCGGGGTCGGATGAATTCAAGAGGGATTACGAGGATCTCGGTGAACGAAAAGGCAGGGCGGAGGAGAAAACAGCACTTGTCTATCAGAGGAAA ATAAGTACTGTAAGGGAAAGGAATCAGAAGAAAGCTCAGAAGGAGGAAGCTGAGAAGCATAATCGTTTGCAAGCTGAACTGAAATCGTTGAAGAGACAAC ATTTCTTATGGCAATTGTTCACTATAGACAAGGATGTTAAAGTGTTGAATGATGAACTTGTTGCTGAAACGACAGAGCGTGAAGGCGATTTGCAAGATCA GCTTGTTAACTTCGAAAAACAAGTTTCTGACAAGAAGAAGGAGCATGCCAAGCACCTGAAAGAGATTATCCAATTAGAAAACAAAATTGCTGAGAGAAGC TCTGAGCTTGAAGAACATCCCGAGCTTCTGAAACTAAACGAGGAAATGAAGCGGCTAAGTTCGAAAATTAAGAGCACCCGTACGGAGCTTAATAGGAGAA GAGAAGAAGGGAAGAAAATTACAGGCGTGATACAAGAATACAGAGTCCCATACAGGATCTATCGGCAAAACTGA
AA sequence Show only first row Show all	>Lus10013583 pacid=23168760 polypeptide=Lus10013583 locus=Lus10013583.g ID=Lus10013583.BGIv1.0 annot-version=v1.0 MPALVSRGRILRLEMENFKSYKGFQTIGPFKDFTAIIGPNGSGKSNLMDAISFVLSVRTSHLRGSQLKDLIYAFDDKEKEQQKCRKAFVRLVYLLANGVE LHFTRGITTAGVSEYRIDGNVVNWDEYDGYLRSLGILVKSTMNVLVFQGDVESIVSKNPKEWTALLEQSSGSDEFKRDYEDLGERKGRAEEKTALVYQRK ISTVRERNQKKAQKEEAEKHNRLQAELKSLKRQHFLWQLFTIDKDVKVLNDELVAETTEREGDLQDQLVNFEKQVSDKKKEHAKHLKEIIQLENKIAERS SELEEHPELLKLNEEMKRLSSKIKSTRTELNRRREEGKKITGVIQEYRVPYRIYRQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10013583 [exp]	0	1
					Lus10012564 [exp]	2.0	0.8147
AT1G16650			S-adenosyl-L-methionine-depend...		Lus10005589 [exp]	5.5	0.8019
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10018993 [exp]	5.5	0.7733
					Lus10011286 [exp]	14.1	0.7017
					Lus10030789 [exp]	17.1	0.7857
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	19.4	0.7012
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023894 [exp]	21.6	0.7784
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009662 [exp]	21.8	0.7668
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10006740 [exp]	23.4	0.7840
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10042994 [exp]	34.6	0.7673

Compare expression of checked genes

Lus10013583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.