Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35930 471 / 2e-165 PUB23 plant U-box 23 (.1) AT3G52450 461 / 4e-161 PUB22 plant U-box 22 (.1) AT3G11840 259 / 5e-82 PUB24 plant U-box 24 (.1) AT3G19380 196 / 3e-58 PUB25 plant U-box 25 (.1) AT1G49780 178 / 3e-51 PUB26 plant U-box 26 (.1) AT1G66160 153 / 6e-42 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT5G37490 152 / 1e-41 ARM repeat superfamily protein (.1) AT1G23030 136 / 6e-35 PUB11 ARM repeat superfamily protein (.1) AT1G71020 124 / 5e-31 ARM repeat superfamily protein (.1.2) AT3G54850 124 / 1e-30 ATPUB14 plant U-box 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021267 [exp] 814 / 0 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 592 / 0 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10029393 [exp] 588 / 0 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10004191 [exp] 297 / 8e-95 AT3G11840 300 / 2e-95 plant U-box 24 (.1) Lus10029395 [exp] 281 / 1e-90 AT3G11840 296 / 8e-96 plant U-box 24 (.1) Lus10000800 [exp] 275 / 1e-88 AT3G11840 293 / 7e-95 plant U-box 24 (.1) Lus10008368 [exp] 270 / 3e-86 AT3G11840 284 / 2e-91 plant U-box 24 (.1) Lus10004095 [exp] 255 / 1e-83 AT2G35930 228 / 3e-73 plant U-box 23 (.1) Lus10013352 [exp] 246 / 1e-79 AT2G35930 212 / 6e-67 plant U-box 23 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202600 [exp] 534 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.016G069400 [exp] 532 / 0 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.009G016200 [exp] 504 / 2e-178 AT2G35930 475 / 4e-167 plant U-box 23 (.1) Potri.001G216100 [exp] 483 / 2e-170 AT2G35930 452 / 5e-158 plant U-box 23 (.1) Potri.009G016100 [exp] 342 / 5e-115 AT3G11840 326 / 6e-108 plant U-box 24 (.1) Potri.006G202700 [exp] 339 / 6e-114 AT3G11840 362 / 3e-122 plant U-box 24 (.1) Potri.016G069500 [exp] 327 / 7e-109 AT3G11840 367 / 7e-124 plant U-box 24 (.1) Potri.001G216300 [exp] 319 / 6e-106 AT3G11840 303 / 6e-99 plant U-box 24 (.1) Potri.002G174500 [exp] 283 / 1e-91 AT2G35930 249 / 9e-79 plant U-box 23 (.1) Potri.014G101100 [exp] 273 / 4e-88 AT2G35930 266 / 3e-85 plant U-box 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10013584 pacid=23168763 polypeptide=Lus10013584 locus=Lus10013584.g ID=Lus10013584.BGIv1.0 annot-version=v1.0 ATGGACGAGATCGACATCCCTCATTACTTCCTCTGCCCGATCTCCCTCCAGTTAATGAAGGACCCCGTCACCCTCCCCACCGGCATCACCTACAACCGCG ACAGCATCGAGCGGTGGCTATTCGTCAACCACAACAAAACATGTCCGGTTACTAAACAACCCATCGACGACAACCCCGTCGACGGCGCCTCCGCCGCCCT CACTCCCAACGTCATCCTCCGCCGGCTCATCCAGTCATGGTGCACCCTCAACGCCTCTCACGGCTTCGAGCGTATTCCTACTCCTAAGCCTCCCGTCACC CGCTCCCAGGTCTCCAAGATCGTCAAAGCCGGGATGAACTCGTCCCCGCAGAAGCAGATCAGCTGCATCAGGCAGCTTAAGTCGCTCGCCAAAGAGAGCG ACGCCAACAAGCGATGCATCGAGTCGGCAGGAGCAGTCGATTTCCTCGCCTCCGTCGTTGTTGCGAATTCGGACTTTATAATCGCTCAGTTCGAGGACGG GAGCCCGTCTGATGAGGCCCTGAGCCTTCTACATGGACTCCGCATCTCTGAGCCCGCGCTCAAGGCTCTGGTCAACAAGAATAACAGCGAGTTTGTTGAC TCTTTGACTAGAGTCATGCAGCGCGGTACTTATGAATCTAGAGCCTATGCGGTTCTGATTTCGAGATCGATTTTCGAAGTGGCCGACCCGCTCAGGATAA TCGGGTTGAGAACCGATTTCTTCATGGAGTTGGTTCAGGTGGTTAAGGATCAAATCTCGAAGCAAGCCTCCAAAGCAGCATTGACTCTATTGGTGGAGCT CTGTCCTTGGGGGAGGAACAGGATCAAGGCAGTGGAAGCCGGTGCGGTTTCCGTCCTGATCGACCTCCTCCTCGATTCGGGAGAGAGGCGGCCGTGCGAG ATGGCATTGGCGGCACTCCACGTGTTGTGCCAGTGCGCGGAAGGGAGAGCGGAGTTTCTTAAACACGCTGCTGGAATGGCGGTGGTATCGAAGAAGATAC TACGAGTTTCGACCGCCGCAACAGAGAAGGCGGTGAGGATCCTGCTGTCGATCGGGAAGTCGTCGGCGACTCCGGCAGTGGTGCAGGAGATGCTACATAT CGGGGTGGTGGCGAAGCTGTGCTTAGTGCTACAAGTAGAGAGTAGTCTAAGGGCTAAGGAGAAGGCGAGGGAAGTGTTGAGGCTGCATGCTAGAGTATGG AAGAACTCGCCATGCATACCGGCGAGTTTGCTCTATTCTTATCCGGCTAGAGACTGA
AA sequence Show only first row Show all	>Lus10013584 pacid=23168763 polypeptide=Lus10013584 locus=Lus10013584.g ID=Lus10013584.BGIv1.0 annot-version=v1.0 MDEIDIPHYFLCPISLQLMKDPVTLPTGITYNRDSIERWLFVNHNKTCPVTKQPIDDNPVDGASAALTPNVILRRLIQSWCTLNASHGFERIPTPKPPVT RSQVSKIVKAGMNSSPQKQISCIRQLKSLAKESDANKRCIESAGAVDFLASVVVANSDFIIAQFEDGSPSDEALSLLHGLRISEPALKALVNKNNSEFVD SLTRVMQRGTYESRAYAVLISRSIFEVADPLRIIGLRTDFFMELVQVVKDQISKQASKAALTLLVELCPWGRNRIKAVEAGAVSVLIDLLLDSGERRPCE MALAALHVLCQCAEGRAEFLKHAAGMAVVSKKILRVSTAATEKAVRILLSIGKSSATPAVVQEMLHIGVVAKLCLVLQVESSLRAKEKAREVLRLHARVW KNSPCIPASLLYSYPARD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35930		PUB23	plant U-box 23 (.1)		Lus10013584 [exp]	0	1
AT4G16600			Nucleotide-diphospho-sugar tra...		Lus10004717 [exp]	1.4	0.9625
					Lus10025243 [exp]	1.4	0.9563
					Lus10022773 [exp]	3.0	0.9315
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10023303 [exp]	5.9	0.9253
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Lus10038082 [exp]	6.5	0.9200
					Lus10006091 [exp]	7.5	0.9276
AT3G47640	bHLH	PYE, bHLH047, P...	POPEYE, basic helix-loop-helix...		Lus10024233 [exp]	8.0	0.8661
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020331 [exp]	10.2	0.9180
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	10.5	0.8918
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10029339 [exp]	11.5	0.9181

Compare expression of checked genes

Lus10013584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.