Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52440 118 / 9e-32 DOF AtDof3,5 Dof-type zinc finger DNA-binding family protein (.1) AT1G21340 116 / 7e-31 DOF AtDof1,2 Dof-type zinc finger DNA-binding family protein (.1) AT5G60200 112 / 3e-29 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G61850 105 / 1e-26 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT2G46590 106 / 3e-26 DOF DAG2, AtDof2,5 DOF AFFECTING GERMINATION 2, Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 105 / 3e-26 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT4G24060 105 / 6e-26 DOF AtDof4,6 Dof-type zinc finger DNA-binding family protein (.1) AT2G28510 102 / 1e-25 DOF AtDof2,1 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 103 / 2e-25 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT5G65590 102 / 2e-25 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021266 [exp] 239 / 6e-78 AT3G52440 109 / 5e-28 Dof-type zinc finger DNA-binding family protein (.1) Lus10028611 [exp] 114 / 2e-30 AT1G21340 135 / 5e-39 Dof-type zinc finger DNA-binding family protein (.1) Lus10029767 [exp] 112 / 2e-29 AT3G52440 145 / 2e-42 Dof-type zinc finger DNA-binding family protein (.1) Lus10014002 [exp] 102 / 6e-26 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10042114 [exp] 99 / 1e-25 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10002381 [exp] 103 / 3e-25 AT5G62940 166 / 4e-48 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10010113 [exp] 102 / 4e-25 AT3G61850 194 / 5e-60 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Lus10015425 [exp] 101 / 4e-25 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10017313 [exp] 102 / 5e-25 AT4G24060 171 / 8e-51 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202500 [exp] 129 / 2e-35 AT3G52440 176 / 3e-54 Dof-type zinc finger DNA-binding family protein (.1) Potri.016G069300 [exp] 124 / 2e-33 AT3G52440 167 / 7e-51 Dof-type zinc finger DNA-binding family protein (.1) Potri.002G070700 [exp] 124 / 2e-33 AT1G21340 151 / 3e-44 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G188900 [exp] 123 / 4e-33 AT1G21340 140 / 5e-40 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G144500 [exp] 105 / 1e-26 AT4G24060 201 / 1e-62 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 104 / 8e-26 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.011G055600 [exp] 104 / 1e-25 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.007G038100 [exp] 103 / 1e-25 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.002G174300 [exp] 102 / 1e-25 AT3G61850 229 / 8e-74 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) Potri.004G046600 [exp] 103 / 2e-25 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10013586 pacid=23168754 polypeptide=Lus10013586 locus=Lus10013586.g ID=Lus10013586.BGIv1.0 annot-version=v1.0 ATGGATATCGGAGCTGCTCGTGACAGCGGAGGCATGTTTTGGACGGAGCCTCCGCCGCCTCTTACTAATATTGGCGGCGCCGTCGAAAGGACAACTCCAA GCTGCCCTCGATGCGGTTCCTCAAACACAAAGTTCTGCTACTACAACAACTACAGCCTCACCCAGCCTCGTTACTTCTGCAAAGGCTGCCGCCGTTACTG GACCAAAGGCGGCTCCCTCCGTAACGTCCCTGTTGGCGGCGGCTGCCGTAAGTCCCGCCGCCCCAACAACCACCACAACAACAATAACAACAAGTCCTCC TCCTCCTCCTCCTTTAAAATATCTTATAATTCACGCCGCCTTTCTCACGACAAGACTACTACTACTACCACTACTTATACCGCTGCACCTCCAGATCAGC ATCATCAAAATGGGTCCCACATCGACCTGGCCACCGTGTACGCCAAGTTCTTGAACAACAGTACTAACGGCGCTAACGATACACTACTTCCCAGTACTAA TAACCCTATGGAAGGCGCATCGATATCATTGTCAGCCGCCACGTCATCATCGGCCACGTCATTGTTCTCCTCATCTATGATGGCCGTCAACCTGCCACTG CTACATCTTCCACCAGGCGGCGGCGTGGATGATCAACTGATGATGTACTACTGTGGTGGTGGTGGTTTGAATAATAACTACGAGCTTCCGCTATTGCCGG GGGAAGAAGATATTTTCCAGCTGGATCCTCCACGTCATCAAGTAGTTGGAACTCAGAATGATGATCAAGAACAACATCCTATTCCTGATGATGGTGAAAG CAATGATCATCTGATGATGATTGGGAACTACTGGAGCAGTTTCGAGCTTTCTAATGTCACAGGATGA
AA sequence Show only first row Show all	>Lus10013586 pacid=23168754 polypeptide=Lus10013586 locus=Lus10013586.g ID=Lus10013586.BGIv1.0 annot-version=v1.0 MDIGAARDSGGMFWTEPPPPLTNIGGAVERTTPSCPRCGSSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKSRRPNNHHNNNNNKSS SSSSFKISYNSRRLSHDKTTTTTTTYTAAPPDQHHQNGSHIDLATVYAKFLNNSTNGANDTLLPSTNNPMEGASISLSAATSSSATSLFSSSMMAVNLPL LHLPPGGGVDDQLMMYYCGGGGLNNNYELPLLPGEEDIFQLDPPRHQVVGTQNDDQEQHPIPDDGESNDHLMMIGNYWSSFELSNVTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10013586 [exp]	0	1
AT5G62280			Protein of unknown function (D...		Lus10031122 [exp]	1.0	0.8716
AT4G26550			Got1/Sft2-like vescicle transp...		Lus10032895 [exp]	4.0	0.8538
AT5G21050			unknown protein		Lus10019547 [exp]	4.5	0.8057
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	22.5	0.7852
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	23.0	0.7629
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10039052 [exp]	24.3	0.7585
AT2G41950			unknown protein		Lus10016243 [exp]	28.0	0.7942
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	31.0	0.7238
AT3G14410			Nucleotide/sugar transporter f...		Lus10016923 [exp]	39.1	0.7891
AT2G02410			unknown protein		Lus10042400 [exp]	64.6	0.7593

Compare expression of checked genes

Lus10013586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.