Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05680 1511 / 0 EMB2016 embryo defective 2016 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021265 [exp] 2614 / 0 AT3G05680 2056 / 0.0 embryo defective 2016 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G069100 [exp] 1886 / 0 AT3G05680 1984 / 0.0 embryo defective 2016 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013587 pacid=23168764 polypeptide=Lus10013587 locus=Lus10013587.g ID=Lus10013587.BGIv1.0 annot-version=v1.0 ATGGGTCGACCCGAGCCATGCGTCTTGTTTTCCCAGACCTTCGTTCACCCTCAACTCGACGAGTACGTTGATGAGGTCAGTGCTCCCGCTCCCTACCCGT CTCCGGCGGGTCCAATCTACTTCTCTTCTCAGTCTTCGTTGTTTTTCTTTGGGAGAATCGTGTTGTTTGGAGAGCCGGTTGTGATTACAGCTTGCGAATT CCTAGAACAGAATGCACCTTCTGCCTCCCAAGTGGTGTCATTGGTCGGGGCTACTGCACCTCCTTCATTTGCTTTGGAGGTATTTGTACAATCTGAGGGA GAGACGAGATTCAGGCGTTTGTGCCAGCCCTTCCTCTATTCCCATTCGTCGTCAAATGTTTTGGAAGTTGAGGCTGTTGTAACTAACCATCTAGTTGTAA GAGGTAGCTACCGCAGTCTGACATTGGTAATATATGGAAACATGGCAGAGGATCTAGGTCAGTTCAATATTGAGTTCGATGATAACTCTTTAACTAATCT TGTTACTTCTGCTGAGGGGAAGCTGGAAGATCTGCCTCTTGCACTGCATTCAGGTTCTAGAGCCATAGAGGAATCATTAATCTCTCTGAAAGTGTTATCT CTACCTGTCGTGGATCTGGATTTATCTACGGAAGTCAAGCAGTTCTTACAACTAACTTCAAAGATGTTAGAGATGCCCCTCCTAGAGGAATCTGTGTACA AGGTTGTAAGTACCATTGTAACAGCTGTTTGTTCTCATGTAACCCACGATTCATGTCGTGAGATTCTTGGTGGAAAGAATTCTAAACCAAGCGGATCTAA CGAGTTTGAAGAGTTTTCCCATATTATTACTGAGGCTAAGAAGGAGCTTCTTGGACTCCTTCAGTCTTCAGGAAATGATATGGCCCATGTTTTAGTGGAT GGTAGTTTTCTAGAATCGGAAGATGACTTGGCTACTTCAAAGGAATTGGTGGAAATGTTCGGCCCACATGTTTGTTTCGACAAGAACTCTTCCCAACCAC ACAAGCGTTTACAGAACAAAAACTTCTTGGGCCTGTGTGTTGGATTTTTATTGTGCTCTGGTAGAGAAAGTTGCTTTCACTTTGTGAATCAAGGGGGAAT CGAGCAACTTGCCCACTTTTTCTCCCATGAAATACCAAACTCTTCAGCAGTTGTCTTACTTTTACTTGGAGTTATTGAGCGGGCTACTCGGCATCCAATT GGCTGTGAAGGAATCTTAGGATGGTGGCCCAGAGAAGATGAAAACGTCCCTACTGGGTTTAGCAAAGGTTATAGTCAATTGCTGAAGTTGTTCCTAGAAA AACCACGCCATGATGTTGCTTCCCTGGCAACTTACATCCTTCATCGTCTTAGAGTCTATGAAGTTGCTTCAAGATATGAGTCTGCTGTTCTATCTGCGTT GGCTGGTCTTTCTGCCTATGAAACAGTAACAAATCATATGGAAAGCATGCTTGACAGTGTTAAATTTCAACTGAAAAAACTCTTGAAATTGATCAATTCA CTTGGTCCAATTGAAGATCCTTCTCCAGTGGCTCATGCAAGCCGATCATTGATCCTTGGTCAAACGGAAGGGCAATTGTCGTATAAAGCAACCAGATCCT TGATTGATTCCTCTGATTGCTCCTTTTTCAATTGTGATCTTGATTCCCATTTGCTGGGACTTCTGAAGGAGAGAGGCTTTCTTCCATTTTCAGCTGCACT TTTTTCATCACCTTTATTTCGCTCAGATGCTGGAGAGGCCATGGGCACATTTGCTGAAATCGCATCAACTGTTGGGGCCATACTTCTCTCTCTTCTTATG CACCGCTCAGGCTTACTTTTCCTCTCAAATCATCCTGAACTCTCCACCATCCTAATTGAAGCTTTGAGGAACACAAATGGAATGAGAATGGAAGAATGCC TTCCTCTGAGATATGCATCTATTTTGTCAGCAAAGGGTTTTGTTTGTGGTCCTCGCGAAGTGGGAACAATCATCGAAACACATTTGAAAGTAGTTAATGC TATTGACAGATTGCTTTTACTCACTCCACATACAGAAGAATTTCTGTGGGTGTTACGGGAGCTCTGTGGTCTCTCCAGATCTGATTGCGGACGCCAAGCT TTGTTGGCTCTGGGATGTTTTCCAGAGGTTATATCAACCTTGATTGAAGCTTTGCACGCTGTTAAAGAAACCGAGCCAGATGCCAAGGGTGGTGGAGCTT CCCCTATAGATGTGGCAATTTTTCATTCAGCTGCCGAGATATTTGAAGTCATCGTCACTGATTCAACTGCATCTTCCTTGAAATCTTGGATTGGACATGT GATGGAACTCTATAAAGCGTTACATTCCTCATCCCCTGGATCCAATAGGAAAGATGCTCCTACCCGACTTTTGGATTGGATAGATGCCGGTGTTGTTTAC CACAAAAATGGGGCTATCGGTCTTCTTAGGTATTCTGCTGCGTTAGCATCTGGAGGGGACACACATTTAACTTCTGCCAGCACTCTAGTTTCAGATTTAA CAGATGTTGAAAATGTTGTGAGTGATGCTTCTGGAGGTCCAGATATAAATGTCTTGGAAAATTTGGCAAAAATGGTTTCAGAGAAGACATTTGAGGGTGT TACACTTCGTGACTCAACAATACCTCAGTTGACAACAGCCATTAGAATTATGGCTTTCATTTCTGAAAACTCAACTGTTGCTGCAATTCTGTACGATGAA GGTGCTCTGACAGTAATCTATGCTATTGTCGTCAACTGTAGCTTCATGCTGGAGAAGTCATCAAATATATATGGTTATCTTGTTGACGAAGGAGCAGAAG GAAACTCTACGTCTGATTTATTGTTGGAACGTAACCGTGAGCAAAGCTTAGTTGATCTTTTGGTTCCTTCTGTGCTATTGTTGATTACCCTTCTTCAGAA ACTGCAGGAAGCAAAAGAACAGCATAGGAACACAAAATTGATGAATGCGCTTCTCCGCCTACATCGGGAAGTAAGCCCAAAGCTTGCTGCATGCACAGCA GATTTGTCATCTTCTTATCCCGATTCTGCACTTGGTTTTGGAGCTGTCTGCCATCTGACCGTGTCAGCTCTTAGTTTCTGGCCGGTTTATGGATGGACGC CGGGCCTTTTCCACTCCCTTCTTGCGAACGTTCAAGCATCTTCATTGCTGGGCTTGGGCCCTAAGGAAACATGTAGCTTGCTTTGTCTTTTGAATAATTT GTTTCCCGAAGAAGGTGTATGGCTTTGGAAGAATGGAATGCCGTTGTTAAGTGCTCTAAGAATGCTGGCTGCGGGAACATTGTTAGGTCCACATAAAGAA AAACAGATCAACTGGTATCTTGAGCCTTCTCACCTTGAGAAATTGCTCAATCAGTTGAGCCCGCAACTTGATAAAATCGCCCAGATTATCAAACACTATG CTTTATCTTCAATGGTTGTCATCCAAGACATGCTACGGGTCTTCATTATTCGGATTGCTTGCCAAAGGGTGGCCAATGCTTCTGTTCTTCTCCAGCCTAT CTTATCTTCCATCCGTGATCATCTTTCTGACTTTTCTTCTCTGTCAGAGATTGATACCTACAAGGTGTATAGGTACCTTGCATTTCTTGCTAGTGTACTA GAGCATCCACGTGCCAAGGTACTGTTATTGGAGGAAGGGATTGCTGATCTGTTAAGTGGGCTGTTAGAGAGGTGTTTTACTGCCATTTATTCCGATGGAT TTCAATTCTCAGAAAGCAAAAGTCTAGCAAAATTGGTGGCTTCTTTGACCATGTGGTGTGTTCCTGCATTCATGTCCATCTCCTTGCTTTGTGGTGCTGA AACTACTGTACTGTGCTCTGGACAGCTTGACTTCCGTGCAAGCTTGAGTTCTCAGCATTGGTCCCAGATTCTACCTTGTCTCTTGAAGTTCTGCCGGGTC TTGCCAGCTGGGAGAGAATTGCTGTCCTGTTTGATCAGTCTTAAAGACATAGGTAGTTGCAATGAAGGTCGTAGTGCTTTACTGACCTTTTGGAGCCGTG TCAATGGAAGCAGCAAGGATTTAGAATCACAAATTGGTGATGAAAGGAACGGAAATGACGAGGCTGATGATTTTGAATGGAGCAAGAACCCTCCTTTGTT GTGTTGCTGGAGGAAATTGCTGAAGTCTGTTGATTCAATGGATGGATTGTCAACTTGTGCGGTGGAGGCTATTAATGCATTGTCAGTTGGATCTTTGAGT TTCTGCGTGGAGGAAAAAAGTTTGAACTGCAATGCAGTGGCGGCAATAAAATACCTCTATGGGATTCCCAACGATTTGGATGAGATGGACAGCTCTTCGG AAGCTGTAACGGCCATAGAGGAAACGACTACGATGCTGAATTCAAAGATTACGAACAGCTACCATGTGGCTGTGCAAGCTACTTTGGACACGTTCAGGCA GCGGAAACCAAATACTAGTCGGCCTCCATCCATGCATGTTGACGACTATGTTGCTCGAGAAAGAAGCGTGGATGGTGGAGGTAATTCAAGCGTTATTGCT GTCCAGAGAATAGGATCTGGCGGTGGACGGCCTCCGTCAATTCACGTGGACGAATTCATGGCTAGAGAAAGAGAGCGACAGAATCCAATGGCTCCGGTAG TCGGAGAGCCGTCACAAGTTAAATCTACCACTGTGGGAAGACCAACAAGTCTAAGCACATCCAATGCTGACGAAAATGCACAAAGTGAGTTTTCTTCGCG CATGTCAGCTGCTCGGCCTGAAATGCCATTAACTCGAGAGCCAAGTGTTACTTCGGATAAGAAGTTCTACGATCAATCTGATGATTTGAAGAATGGTTTT CCAAGTAAACCATCCGTGGGATTTGATTCTGTTACTGGTGCTTCTGTCTATAATAGTGGTCCAGGATCATCCATGCATGTGCAATTGGATTCCAGAAACA CACCTCCGAATGTGTATATGAAGAATAGTCCTCATAATGCACCAGGATCACGAGGAGGTTATGCCTTACATCAACCACCTTTGCCTCCAATGCCACCGCC ATCAACAGTATCACCTATAATACATCAGAGCCCAAGTCGGTCATCCCCCTTCTTGAAGCCATCAGCAGAGGCTCAGCCAGATTATCCTCCTGCTTACGTA AATAGTCCTGCATCCCACGGTTTACCAGATTCCAAGTATTCAAGGAGTTCTCCGAGTGGGTCTGCCGGGCGTCATCCACCGCTTCCTCCAACGCAGCCAC CTTTCTCAGCTAGCTCTTACAATCTGCCTTCAAATCCTCAGTCTTCAGCATATTCCGAGTTCCAACAGACCTCTCATCCATCCATGATGGATCCCAGATT AGCAGCCAATCTATCTGCTTCAGCAGCTGCTGGCCTAACTTCTTACCCACCTCCTCAAATGATGTCACCATTGGGTTTCAGTAGGCCAAGTCAGCAACCA GGTGATACCCAGAGTATGCTCCCCATGATGCAGCAGTCAATGCATCAGTTGCAGCCTCTCCTGCCGCCACTTCAACGCCCTTCACAAGCCCATCTCTGGC AGCCATCCCAACAGCAGCAGCAGCAGCAGCAGCTAGAACAAAACTCTTTCCAGGTTCCAGTTCATCAATTGCAAATGCTGCAACAGCCTCAACAAATGCC CAGCATGCACCCTCACTATCAAGCTCAACAGCAGCAGCAGCAACAATCTCAATTTGAGCATGTACATCAATCTCAAGGGGATGCCTCTTCTTCCTCCCAG CAGCAGCGAGATCTTGGGATGTCGTCCTTACAAGACTACTTCAAAGATCCCCAGGCCATCACGGCTCTGTTGAGTAACAAGGAGGAGCTATGCCGGCTTT TGGAGCAGCACCCGAAATTGATGCAGATGCTTCAGGAGAGATTGGGGCAGCAATAA
AA sequence Show only first row Show all	>Lus10013587 pacid=23168764 polypeptide=Lus10013587 locus=Lus10013587.g ID=Lus10013587.BGIv1.0 annot-version=v1.0 MGRPEPCVLFSQTFVHPQLDEYVDEVSAPAPYPSPAGPIYFSSQSSLFFFGRIVLFGEPVVITACEFLEQNAPSASQVVSLVGATAPPSFALEVFVQSEG ETRFRRLCQPFLYSHSSSNVLEVEAVVTNHLVVRGSYRSLTLVIYGNMAEDLGQFNIEFDDNSLTNLVTSAEGKLEDLPLALHSGSRAIEESLISLKVLS LPVVDLDLSTEVKQFLQLTSKMLEMPLLEESVYKVVSTIVTAVCSHVTHDSCREILGGKNSKPSGSNEFEEFSHIITEAKKELLGLLQSSGNDMAHVLVD GSFLESEDDLATSKELVEMFGPHVCFDKNSSQPHKRLQNKNFLGLCVGFLLCSGRESCFHFVNQGGIEQLAHFFSHEIPNSSAVVLLLLGVIERATRHPI GCEGILGWWPREDENVPTGFSKGYSQLLKLFLEKPRHDVASLATYILHRLRVYEVASRYESAVLSALAGLSAYETVTNHMESMLDSVKFQLKKLLKLINS LGPIEDPSPVAHASRSLILGQTEGQLSYKATRSLIDSSDCSFFNCDLDSHLLGLLKERGFLPFSAALFSSPLFRSDAGEAMGTFAEIASTVGAILLSLLM HRSGLLFLSNHPELSTILIEALRNTNGMRMEECLPLRYASILSAKGFVCGPREVGTIIETHLKVVNAIDRLLLLTPHTEEFLWVLRELCGLSRSDCGRQA LLALGCFPEVISTLIEALHAVKETEPDAKGGGASPIDVAIFHSAAEIFEVIVTDSTASSLKSWIGHVMELYKALHSSSPGSNRKDAPTRLLDWIDAGVVY HKNGAIGLLRYSAALASGGDTHLTSASTLVSDLTDVENVVSDASGGPDINVLENLAKMVSEKTFEGVTLRDSTIPQLTTAIRIMAFISENSTVAAILYDE GALTVIYAIVVNCSFMLEKSSNIYGYLVDEGAEGNSTSDLLLERNREQSLVDLLVPSVLLLITLLQKLQEAKEQHRNTKLMNALLRLHREVSPKLAACTA DLSSSYPDSALGFGAVCHLTVSALSFWPVYGWTPGLFHSLLANVQASSLLGLGPKETCSLLCLLNNLFPEEGVWLWKNGMPLLSALRMLAAGTLLGPHKE KQINWYLEPSHLEKLLNQLSPQLDKIAQIIKHYALSSMVVIQDMLRVFIIRIACQRVANASVLLQPILSSIRDHLSDFSSLSEIDTYKVYRYLAFLASVL EHPRAKVLLLEEGIADLLSGLLERCFTAIYSDGFQFSESKSLAKLVASLTMWCVPAFMSISLLCGAETTVLCSGQLDFRASLSSQHWSQILPCLLKFCRV LPAGRELLSCLISLKDIGSCNEGRSALLTFWSRVNGSSKDLESQIGDERNGNDEADDFEWSKNPPLLCCWRKLLKSVDSMDGLSTCAVEAINALSVGSLS FCVEEKSLNCNAVAAIKYLYGIPNDLDEMDSSSEAVTAIEETTTMLNSKITNSYHVAVQATLDTFRQRKPNTSRPPSMHVDDYVARERSVDGGGNSSVIA VQRIGSGGGRPPSIHVDEFMARERERQNPMAPVVGEPSQVKSTTVGRPTSLSTSNADENAQSEFSSRMSAARPEMPLTREPSVTSDKKFYDQSDDLKNGF PSKPSVGFDSVTGASVYNSGPGSSMHVQLDSRNTPPNVYMKNSPHNAPGSRGGYALHQPPLPPMPPPSTVSPIIHQSPSRSSPFLKPSAEAQPDYPPAYV NSPASHGLPDSKYSRSSPSGSAGRHPPLPPTQPPFSASSYNLPSNPQSSAYSEFQQTSHPSMMDPRLAANLSASAAAGLTSYPPPQMMSPLGFSRPSQQP GDTQSMLPMMQQSMHQLQPLLPPLQRPSQAHLWQPSQQQQQQQQLEQNSFQVPVHQLQMLQQPQQMPSMHPHYQAQQQQQQQSQFEHVHQSQGDASSSSQ QQRDLGMSSLQDYFKDPQAITALLSNKEELCRLLEQHPKLMQMLQERLGQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Lus10013587 [exp]	0	1
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10007793 [exp]	1.4	0.9743
AT1G58060			RNA helicase family protein (....		Lus10020816 [exp]	1.7	0.9652
AT4G17330		ATG2484-1	G2484-1 protein (.1)		Lus10004730 [exp]	2.0	0.9717
AT4G38760			Protein of unknown function (D...		Lus10012168 [exp]	2.2	0.9576
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	4.6	0.9541
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	5.7	0.9436
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	5.7	0.9595
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Lus10016103 [exp]	6.0	0.9506
AT4G24680		MOS1	modifier of snc1 (.1)		Lus10001246 [exp]	7.1	0.9499
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	9.2	0.9550

Compare expression of checked genes

Lus10013587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.