Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16280 518 / 1e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021264 [exp] 979 / 0 AT5G16280 1489 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068800 [exp] 587 / 0 AT5G16280 1531 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013588 pacid=23168714 polypeptide=Lus10013588 locus=Lus10013588.g ID=Lus10013588.BGIv1.0 annot-version=v1.0 ATGGATCCGGCGAGCACGCCACTTGGCAAAATGCTTTTGGAGGAGATCACTCCGGTGGTCATGGTGCTTCGAACGCCTTCCGTTGAGGAAGCCTGCTTTA AGAACGGCCTTTCATTCGTCGAAATGCTCAGTCCTTTCTTTCCATTACGCACGTCTAGTGATCAGCCTTACAGGTTGCGGAAGTTTAAACTGAGGTTGTT TTATGAGTCGGATATCCGGCAGCCAAATATGGAGGTAGCAAAGGAGCGATTGAAGCAGGTAATCACCAAGGCTGGGGAGAAAGATAATTTACTTGACAAC TCTGATGAACTTTTACCTTCATGGTTTGAATACCTCAACAAGGAGCTCATACAAACAGTCTCCTTTTCAGAGCATGAAACCTTTGACCACCCTGTGGCAT GTCTTTTAGTTGTGTCATCGAAGGACGAGCAGCCTATCAATAGATTTGTTGACCTCTTCAACACTAACAAACTACCTGCTCTTCTGAATGATGGTGCAAT GGATCCAAAGATTTTGAAGCATTATTTGCTGGTTCATGACAATCACGAAGGGTCTTCAGAAAAGGCTTTAAAAATCCAGTCAGAAATGAAAAGTACATTT GGTACAAATGAGTGCCATTTACTTTGCATTAATTCTTCACAAGATTCAGAAATGGAACATCAAGATAACCCTTGGGCTTCTTATAAATCTGATGCTTCCC CTGTTCAGCGCCTTGGTTGTCGCCTTAATGTTGATGATATTAGTGCGTTAAAGGATTTGATGCATGAGTTTTCATCTAAACACGTGATCCCATATATGGA GCAAAAAGTCCGTCTACTTAATCAACAGGTATCTGCTACAAGAAGGGGTTTTAAAAACCAAATTAAAAATTTGTGGTGGAGAAAAGGGAAAGATGACCCA AATGAAACTCCCAGTGGTTCTATGTATACTTTCAGCTCAATTGAGTCGCAGATCAGAGTTCTTGGGGACCATGCTTTCATGTTGCACGATTATGAACTTG CATTGGCCAACTATCGCCTTATATCAACAGATTATAAACTTGATAAGGCTTGGAAGCGCTATGCTGGAGTGCAGGTGCAGTTGACAGTTACTCCTAATAT TGAAGGGACGCTAAAACTTCTAGGTGTGAGGTGGAAGTTTTCAGGCTGTGTTGTTGGTTTTTACACTTTTGAGTCCATTCTTTTGGTGAAGAAACTCGCA AGGAGGAAGAGGAAATCTAAGCATTCACCTCTTAATGACCTGAAATTTGTAGTCGTTAAGTCTGTACCAAAGCTTGAGGGTCTCATTCGTGCTTTTCCAG AAAAGGTGTATGCTGGACATCTACAACATCTCGTTTTGGAATTGAAAAACCAATCAGATTGTTCTATAAAGAATCTAAAGATGAAGATAAGTCATCCTAG GTTTCTTAGCATTGGGAATCACGAAGTTCTGGATATAGATTTTCCTGCTTGCTTAGAAAAACGGCCAGGCAATGAAGAAGATGGTGCACATGCTAATCTG AAAAAGGTGTCTCAAGGTGTTTTCTTCTTTCCCGAGGATGTTGCAATACAAGGAGACAAGCCATTATTCTGGCCACTATGGCTTCATGCTGCTGTTCCTG GACATGTTCCATTGTACGTAATAATATACTATGAGATGGAGGATACGTCTAGTGTGATGAGATACCGCACACTGCGGTTGCACTATAATTTGCAGGTGTT GCCATCATTGGATGTTTCATTTAAAATCAGTCCTTCCCCTTCAAGGTTGCAAGAGTTCCTTGTGCGCATGGATGTTGTCAATAAAACTAGTTCGGAGAGT TTCCAGGTTACCCAGCTGTCTTCAATTGGAGACAACTGGGGAATTTCAATGCTTCAACCTGTCGATGGAATCATGCCGTCACAACCTCTGACTGTTGGCC AAGCGTTCTCCTTTTTCTTCATGCTCAAGAGTCGTAGGAAAGCGGTGAATGCAGCAGAAAATGTGTCAGCTCTTTCTCCTGATCTCGGAAGTGATGTAGT GTTGGTCTCTGAGAGCTTGAAAGAGCCCCTCTTTAGTGTATCCAACTCCCCTTTGGCCGATTTCCATGATTCGGAAAGATCACAACACGGAACCCGTAAC CAGTATGGTATTAATTATTTCCCTGCGCTTATTCCGTCCTTTGCTAAACTGTTTCAAACGGTTGCATTTCTCAGAACTGCAAGCACAAGCCCGATAACGT GGACAATGAGTGGACCTCGAACCAAACACCACAACTTCTCATCTTCGTTTTGCGAAATAAGTCTGCAGATGACGATCCACAACTCATCAGACTCTGCTGC ATCTGTGAGCATTAACACTGCAGATTCTGCTGGCAACGGCAGCCAATCAAACACTACCGGAAACCAGGGCGGATGGCAGCCAGTGGTTACAGACACTAAG GTGGTCCCGACTTCTGAAGCCGGAATCGTAACCAGGAAGAACGAGTCATCGGAACCCATCTCCCCTGTCTCTCCGTTCATTTGGTCCGGCTCAAGCTCCA GCAACCTCCAACTCCAGCCGAGGTCCTCTGCCGAGATTCCTATGCAGATTTGTGTCTTCTCCCCAGGCACTTACGATCTGTCGAGCTACGTTTTGAAATG GAACCTGAAACCAGAGGAAGGAAACGTGGATTTGCAGAGGAATCTGGATGAGATGAGGAAACTGTCTGGGACTTGCCAAGGGTATCCATACTTCTTAACG GTTCTCCAGTTATAA
AA sequence Show only first row Show all	>Lus10013588 pacid=23168714 polypeptide=Lus10013588 locus=Lus10013588.g ID=Lus10013588.BGIv1.0 annot-version=v1.0 MDPASTPLGKMLLEEITPVVMVLRTPSVEEACFKNGLSFVEMLSPFFPLRTSSDQPYRLRKFKLRLFYESDIRQPNMEVAKERLKQVITKAGEKDNLLDN SDELLPSWFEYLNKELIQTVSFSEHETFDHPVACLLVVSSKDEQPINRFVDLFNTNKLPALLNDGAMDPKILKHYLLVHDNHEGSSEKALKIQSEMKSTF GTNECHLLCINSSQDSEMEHQDNPWASYKSDASPVQRLGCRLNVDDISALKDLMHEFSSKHVIPYMEQKVRLLNQQVSATRRGFKNQIKNLWWRKGKDDP NETPSGSMYTFSSIESQIRVLGDHAFMLHDYELALANYRLISTDYKLDKAWKRYAGVQVQLTVTPNIEGTLKLLGVRWKFSGCVVGFYTFESILLVKKLA RRKRKSKHSPLNDLKFVVVKSVPKLEGLIRAFPEKVYAGHLQHLVLELKNQSDCSIKNLKMKISHPRFLSIGNHEVLDIDFPACLEKRPGNEEDGAHANL KKVSQGVFFFPEDVAIQGDKPLFWPLWLHAAVPGHVPLYVIIYYEMEDTSSVMRYRTLRLHYNLQVLPSLDVSFKISPSPSRLQEFLVRMDVVNKTSSES FQVTQLSSIGDNWGISMLQPVDGIMPSQPLTVGQAFSFFFMLKSRRKAVNAAENVSALSPDLGSDVVLVSESLKEPLFSVSNSPLADFHDSERSQHGTRN QYGINYFPALIPSFAKLFQTVAFLRTASTSPITWTMSGPRTKHHNFSSSFCEISLQMTIHNSSDSAASVSINTADSAGNGSQSNTTGNQGGWQPVVTDTK VVPTSEAGIVTRKNESSEPISPVSPFIWSGSSSSNLQLQPRSSAEIPMQICVFSPGTYDLSSYVLKWNLKPEEGNVDLQRNLDEMRKLSGTCQGYPYFLT VLQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	0	1
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	1.0	0.9179
AT2G21630			Sec23/Sec24 protein transport ...		Lus10043359 [exp]	1.7	0.9042
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	2.0	0.9057
AT3G17900			unknown protein		Lus10036712 [exp]	2.2	0.8875
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	3.3	0.8705
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	6.6	0.9040
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	7.5	0.8761
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10012303 [exp]	9.8	0.8657
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	10.2	0.8032
AT1G72390			unknown protein		Lus10013169 [exp]	12.5	0.8695

Compare expression of checked genes

Lus10013588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.