Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11820 436 / 4e-155 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 369 / 3e-128 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G61290 359 / 6e-125 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT1G11250 358 / 2e-124 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT4G03330 329 / 5e-113 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT3G03800 254 / 1e-83 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 245 / 5e-80 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT1G08560 238 / 4e-77 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT2G18260 196 / 9e-61 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT5G16830 51 / 4e-07 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021263 [exp] 535 / 0 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 471 / 5e-169 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10016173 [exp] 469 / 1e-167 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10018441 [exp] 357 / 1e-123 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 355 / 4e-123 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10020089 [exp] 354 / 6e-122 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1) Lus10006735 [exp] 350 / 5e-121 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10042527 [exp] 264 / 3e-87 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10021988 [exp] 262 / 1e-86 AT1G08560 388 / 2e-136 KNOLLE, syntaxin of plants 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G202200 [exp] 455 / 8e-163 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 454 / 2e-162 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.011G043700 [exp] 359 / 9e-125 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.004G035400 [exp] 355 / 3e-123 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.013G053200 [exp] 270 / 1e-89 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 264 / 3e-87 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G036700 [exp] 258 / 3e-85 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1) Potri.007G123000 [exp] 223 / 2e-70 AT3G03800 300 / 1e-100 syntaxin of plants 131 (.1) Potri.007G023100 [exp] 210 / 3e-66 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.009G117900 [exp] 199 / 3e-62 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10013589 pacid=23168769 polypeptide=Lus10013589 locus=Lus10013589.g ID=Lus10013589.BGIv1.0 annot-version=v1.0 ATGTCCGAGTCCCAGTCCGCCTCCGCCGGCGTCAACCTCAACAAGTTCTTCGACGATGTCGAGTCCATCAAAGACGACCTCAAGCAACTCGAGAAGCTCA ACTCCAGCCTACAGTCCTCCCACGAGCGCAGCAAGACCCTCCACCAGGCCAAATCCGTCAAGGACTTGCGTTCCAAAATGGACGCCGACGTCGCCACCGC CTTGAAGACTGCCAAGCTTATTAAAGTCCGCTTGGAGTCCCTTGATCGCTCCAACGCTGCTAACCGGAGCCTCCCCGGTTGTGGACCCGGGTCATCCTCT GACCGGACGCGAACCTCAGTGGTTAATGGGCTGAGGAAGAAGCTCAAGGACTCCATGGACAGTTTTAATGCTCTGAGGGAGAAGATTTCGTCCGAGTATC GGGAGACGGTTGAGAGGAGGTTCTTCACCGTCACTGGAGAGAATCCTGACGAGAAGACGCTCGATCGTTTGATCTCCACAGGCGAGAGCGAGACATTTCT GCAGAAGGCGATCCAAGAGCAAGGCAGGGGGAGGGTACTGGACACAATCAACGAGATTCAAGAGAGGCACGATGCGGTGAAGGACATGGAGAAGAACCTC AAGGAGCTGCACCAAGTGTTCTTGGACATGGCAGTTTTGGTCCAGGCACAAGGTGAGAAGTTGGACGACATTGAGAGCAATATGCAGAGAGCAAGCTCCT TCGTCCGTGGAGGAACTCAACAGCTGCAGACTGCCAGAGTCCTCCAGAAGAACACCCGGAAATGGACTTGCTACGCCATCACAATCCTCCTAGTTATCAT CCTCCTTGTTGTTCTCTTCACCGTCAGGCCTTGGAACAACAACGGCGGTGGTGGTGGTGGCGGTAACAACCAACCTGCAGCTCCAGTTCAGAATCAACCC CCACCTGCTCAGATTCAACCCCCACCTCCAGGAGTATAG
AA sequence Show only first row Show all	>Lus10013589 pacid=23168769 polypeptide=Lus10013589 locus=Lus10013589.g ID=Lus10013589.BGIv1.0 annot-version=v1.0 MSESQSASAGVNLNKFFDDVESIKDDLKQLEKLNSSLQSSHERSKTLHQAKSVKDLRSKMDADVATALKTAKLIKVRLESLDRSNAANRSLPGCGPGSSS DRTRTSVVNGLRKKLKDSMDSFNALREKISSEYRETVERRFFTVTGENPDEKTLDRLISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNL KELHQVFLDMAVLVQAQGEKLDDIESNMQRASSFVRGGTQQLQTARVLQKNTRKWTCYAITILLVIILLVVLFTVRPWNNNGGGGGGGNNQPAAPVQNQP PPAQIQPPPPGV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10013589 [exp]	0	1
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	2.0	0.9652
AT1G56240		ATPP2-B13	phloem protein 2-B13 (.1)		Lus10031471 [exp]	2.4	0.9570
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10039103 [exp]	3.0	0.9357
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10031473 [exp]	4.0	0.9468
AT4G27270			Quinone reductase family prote...		Lus10006748 [exp]	4.8	0.9197
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	4.9	0.9389
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015208 [exp]	5.2	0.9549
AT3G59080			Eukaryotic aspartyl protease f...		Lus10007335 [exp]	5.5	0.9355
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	6.0	0.9434
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10018631 [exp]	6.7	0.9259

Compare expression of checked genes

Lus10013589 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.