Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52390 524 / 0 TatD related DNase (.1.2) AT3G03500 83 / 2e-18 TatD related DNase (.1) AT5G17570 71 / 1e-13 TatD related DNase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021262 [exp] 619 / 0 AT3G52390 521 / 0.0 TatD related DNase (.1.2) Lus10021077 [exp] 79 / 1e-16 AT5G17570 447 / 3e-159 TatD related DNase (.1) Lus10017234 [exp] 66 / 6e-12 AT5G17570 397 / 7e-140 TatD related DNase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068400 [exp] 526 / 0 AT3G52390 566 / 0.0 TatD related DNase (.1.2) Potri.013G073800 [exp] 81 / 3e-17 AT5G17570 456 / 5e-163 TatD related DNase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF01026 [flax] [poplar] TatD_DNase TatD related DNase
Representative CDS sequence Show only first row Show all	>Lus10013590 pacid=23168705 polypeptide=Lus10013590 locus=Lus10013590.g ID=Lus10013590.BGIv1.0 annot-version=v1.0 ATGTTCAGTGGGGTTTATCATGGCAAGCAATGCCACGTAGCGGATATACCTACTGTCCTTAATCGGGCTTGGAGCTCTGGCGTTGAACGAATCATTGTCA CTGGTGGATCTCTGGAGGAATCAAAGAAAGCTCTTGAGATTGCCGAGACAGACGGAAGGCTTTTCTGTACTGTTGGTGTACACCCTACTAGATGCACGGA ATTTGAAGAAAGTGGGGACCCAGAGAATCATTTCCAATCTCTGTTGTCGTTGGCCAAAGAAGGAATTGAGAAAGGGAAGGTTGTGGCAGTTGGTGAATGT GGATTGGACTATGACAGGCTCCAGTTTTGCTCTGCTGAGGTTCAGAAGAAGTATTTTGAGAAGCAGTTTGAATTAGCACATGCCACAAAGCTGCCTATGT TTCTTCATATGCGTGCAGCTGCAGAAGACTTTTGCGAGATCATGGAGTCTAACAAATACAGGTTTACAGGTGGCATAACTCATTCCTTTACTGGTAGTGC AGAAGAAAGCAAAAAGCTTCTCTCATTCAAGAATATGTACATAGGTGTGAATGGTTGCTCTTTGAAAACAGCTGAGAACCTTGACGTTGTGAGGCAGATT CCGATTGATAGAATGATGATAGAGACAGATTCTCCCTACTGTGAAATAAAGAACACCCATGCTGGGATCAAACTTGTGAAGTCATCTTGGCCTTCCAAGA AGAAAGAGAAGTATGAGCCAGGGTCCATTGTCAAAGGCCGGAACGAACCTTGTTTAGTTCGGCAAGTTCTCGAGGTTGTAGCGGGCTGTAAAGGCGTCGA CCTGGAAGAAATGAGCCGAACTATCTACCACAACACCTGCAGGATTTTCTTTCCCCAAGACTTGGATTCGGCGGCAGAGTCTATTCTTGGTGGCCATCAG GATTCTTAG
AA sequence Show only first row Show all	>Lus10013590 pacid=23168705 polypeptide=Lus10013590 locus=Lus10013590.g ID=Lus10013590.BGIv1.0 annot-version=v1.0 MFSGVYHGKQCHVADIPTVLNRAWSSGVERIIVTGGSLEESKKALEIAETDGRLFCTVGVHPTRCTEFEESGDPENHFQSLLSLAKEGIEKGKVVAVGEC GLDYDRLQFCSAEVQKKYFEKQFELAHATKLPMFLHMRAAAEDFCEIMESNKYRFTGGITHSFTGSAEESKKLLSFKNMYIGVNGCSLKTAENLDVVRQI PIDRMMIETDSPYCEIKNTHAGIKLVKSSWPSKKKEKYEPGSIVKGRNEPCLVRQVLEVVAGCKGVDLEEMSRTIYHNTCRIFFPQDLDSAAESILGGHQ DS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52390			TatD related DNase (.1.2)		Lus10013590 [exp]	0	1
AT3G49100			Signal recognition particle, S...		Lus10018775 [exp]	4.7	0.8929
AT4G29430		RPS15AE	ribosomal protein S15A E (.1)		Lus10000975 [exp]	4.9	0.9073
AT1G67785			unknown protein		Lus10042077 [exp]	6.9	0.8681
AT5G11390		WIT1	WPP domain-interacting protein...		Lus10005102 [exp]	7.9	0.8741
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Lus10011491 [exp]	9.5	0.8688
AT5G51960			unknown protein		Lus10041422 [exp]	12.1	0.8638
AT5G26800			unknown protein		Lus10011180 [exp]	13.7	0.8820
AT5G50810		TIM8	translocase inner membrane sub...		Lus10022450 [exp]	13.9	0.8827
AT2G45860			unknown protein		Lus10037857 [exp]	15.2	0.8398
AT5G56710			Ribosomal protein L31e family ...		Lus10037703 [exp]	18.0	0.8835

Compare expression of checked genes

Lus10013590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.