Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52380 129 / 1e-34 CP33, PDE322 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) AT3G52150 91 / 5e-21 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G37220 84 / 1e-18 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G50250 79 / 8e-17 CP31B chloroplast RNA-binding protein 31B (.1) AT4G24770 74 / 1e-14 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G35410 74 / 1e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G53460 73 / 3e-14 CP29 chloroplast RNA-binding protein 29 (.1.2.3.4) AT1G60000 71 / 4e-14 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G06210 66 / 6e-13 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21440 62 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021260 [exp] 259 / 2e-87 AT3G52380 70 / 1e-14 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10021261 [exp] 184 / 2e-58 AT3G52380 52 / 5e-09 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10029372 [exp] 150 / 1e-42 AT3G52380 269 / 6e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10016174 [exp] 147 / 2e-41 AT3G52380 275 / 3e-91 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Lus10023191 [exp] 91 / 1e-20 AT3G53460 263 / 2e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10002222 [exp] 89 / 4e-20 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10026514 [exp] 84 / 2e-18 AT2G37220 284 / 4e-96 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013801 [exp] 81 / 1e-16 AT3G53460 258 / 2e-82 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10023723 [exp] 79 / 4e-16 AT1G60000 259 / 1e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068300 [exp] 144 / 1e-40 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.006G202000 [exp] 131 / 1e-35 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.016G090700 [exp] 93 / 1e-21 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G172100 [exp] 89 / 4e-20 AT1G60000 288 / 5e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.006G127200 [exp] 88 / 7e-20 AT2G37220 269 / 5e-90 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G086500 [exp] 88 / 1e-19 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G141300 [exp] 87 / 3e-19 AT2G35410 248 / 2e-81 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G065900 [exp] 85 / 5e-19 AT3G52150 237 / 2e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.010G065600 [exp] 77 / 7e-16 AT1G60000 287 / 9e-98 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G340800 [exp] 74 / 5e-15 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10013591 pacid=23168767 polypeptide=Lus10013591 locus=Lus10013591.g ID=Lus10013591.BGIv1.0 annot-version=v1.0 ATGGCACCCCTATCTATGGCTACCTCGTCGGTTATTGCGTCTCCGATTCGTATCAAGATCCCCTTCAATCTTACTATAGCTGCTCACTCTCCACACTCAC ACTACTTTTCATCGTCGAAGCCGATTGATGTCATCTTACTCCCGAGACCTTTGGAGCTTGCGAACCAAGCAAACTCAACCACCACCTTGTTTCGGCCTCG CCGCCTACTCGCCGCGGGTTTGGACGATTTTGAGGTAGATAGAGGCGAGAGCTTCACTGACGAAGATGAGGACCCGGTAACTGACAACGAGAATCACCCT CAGGAAAGCGAGGAGGAAGTTGATGGAGAAAACGATGGGGCCGGACCATCAAACGACGGAAGGACGATTTTCTTCAGCGGTATACCGTTTTCGATGACTT CCGCTGAAGTGACTGAGCTTTTCGACGGGGTGGGTCAAGTGGAGAATGTCGAGCTTATCTGGGATACGATCATGGATAGGAGCAGAGGGTTCGGGTATGT TACAATGGCGACTGCTGAAGAAGCTAATTCAGTTATGCGAATGTTCAATGGAGCAGTAATCGGAGGTCGATCTTGGAGGCTGAGCTTCCCAAAGGAGCCA CCATCAGGTATGCGGAGAGAAATGATAATGGAGTCGAGAGCCGGGAGGGAGAGTAAGGGCTCTAGGATGCTGGTGGTAAGAAGACTTGGTTTCAAAATCA CAAAAGAAGATCTTGAACAAGCCTTTAAAGACCAGCCTGGATTCTATAAGGCTGAGATCAGGACCAGTTTGCCTACAGGGAAATCTCTAGGTTCCGGTCT ATTGTGGTTTCAAACTTCGGAGGATGCACTCACTGCTCTAAGCTGTATGCAAGGAACGGTGGTGAAAGGGCAGACTTTGCTACTGAAGAAGCCTTTGCCG AATTCGCCACAACAGATTGTCGAGGAATATCAACAGAAACAGAAGAGCAAGTCATCTCATTCTAGTACCAGCGAGTGA
AA sequence Show only first row Show all	>Lus10013591 pacid=23168767 polypeptide=Lus10013591 locus=Lus10013591.g ID=Lus10013591.BGIv1.0 annot-version=v1.0 MAPLSMATSSVIASPIRIKIPFNLTIAAHSPHSHYFSSSKPIDVILLPRPLELANQANSTTTLFRPRRLLAAGLDDFEVDRGESFTDEDEDPVTDNENHP QESEEEVDGENDGAGPSNDGRTIFFSGIPFSMTSAEVTELFDGVGQVENVELIWDTIMDRSRGFGYVTMATAEEANSVMRMFNGAVIGGRSWRLSFPKEP PSGMRREMIMESRAGRESKGSRMLVVRRLGFKITKEDLEQAFKDQPGFYKAEIRTSLPTGKSLGSGLLWFQTSEDALTALSCMQGTVVKGQTLLLKKPLP NSPQQIVEEYQQKQKSKSSHSSTSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10013591 [exp]	0	1
AT4G24890		ATPAP24, PAP24	ARABIDOPSIS THALIANA PURPLE AC...		Lus10016356 [exp]	4.0	0.9260
AT5G58260		NdhN	NADH dehydrogenase-like comple...		Lus10034438 [exp]	4.2	0.9188
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	4.9	0.9318
AT1G15980		PnsB1, NDH48, N...	Photosynthetic NDH subcomplex...		Lus10026086 [exp]	4.9	0.9310
AT1G45474		LHCA5	photosystem I light harvesting...		Lus10042657 [exp]	8.7	0.9270
AT4G27800		TAP38, PPH1	PROTEIN PHOSPHATASE 1, thylako...		Lus10022384 [exp]	12.8	0.9094
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10017574 [exp]	16.7	0.9176
AT4G01150			unknown protein		Lus10012645 [exp]	17.5	0.9188
AT4G21445			unknown protein		Lus10018419 [exp]	20.0	0.8917
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10000759 [exp]	20.8	0.9072

Compare expression of checked genes

Lus10013591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.