Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06510 170 / 1e-50 CCAAT NF-YA10 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) AT3G05690 139 / 2e-38 CCAAT NF-YA2, ATHAP2B, HAP2B, UNE8 UNFERTILIZED EMBRYO SAC 8, "nuclear factor Y, subunit A2", HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, HEME ACTIVATOR PROTEIN \(YEAST\) HOMOLOG 2B, nuclear factor Y, subunit A2 (.1) AT5G12840 112 / 1e-28 CCAAT NF-YA1, ATHAP2A, HAP2A, EMB2220 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) AT1G30500 105 / 8e-27 CCAAT NF-YA7 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) AT1G72830 108 / 1e-26 CCAAT NF-YA3, ATHAP2C, HAP2C "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) AT3G20910 101 / 3e-24 CCAAT NF-YA9 "nuclear factor Y, subunit A9", nuclear factor Y, subunit A9 (.1) AT1G54160 101 / 3e-24 CCAAT NFYA5, NF-YA5 NUCLEAR FACTOR Y A5, "nuclear factor Y, subunit A5", nuclear factor Y, subunit A5 (.1) AT1G17590 101 / 4e-24 CCAAT NF-YA8 "nuclear factor Y, subunit A8", nuclear factor Y, subunit A8 (.1.2.3.4) AT2G34720 98 / 5e-24 CCAAT NF-YA4 "nuclear factor Y, subunit A4", nuclear factor Y, subunit A4 (.1) AT3G14020 96 / 3e-22 CCAAT NF-YA6 "nuclear factor Y, subunit A6", nuclear factor Y, subunit A6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021259 [exp] 601 / 0 AT5G06510 178 / 5e-54 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Lus10019708 [exp] 113 / 3e-27 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016411 [exp] 108 / 6e-27 AT5G12840 140 / 1e-39 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10023358 [exp] 103 / 2e-26 AT1G30500 192 / 5e-63 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10012202 [exp] 104 / 1e-25 AT1G30500 121 / 7e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10011326 [exp] 102 / 4e-25 AT1G30500 118 / 2e-32 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10038448 [exp] 99 / 6e-24 AT1G30500 205 / 1e-66 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Lus10009944 [exp] 92 / 8e-21 AT5G12840 229 / 1e-73 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Lus10030137 [exp] 81 / 4e-17 AT5G12840 170 / 5e-51 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G068200 [exp] 281 / 2e-93 AT5G06510 194 / 2e-60 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G201900 [exp] 257 / 8e-84 AT5G06510 166 / 3e-49 "nuclear factor Y, subunit A10", nuclear factor Y, subunit A10 (.1.2.3) Potri.006G145100 [exp] 120 / 3e-31 AT1G72830 168 / 3e-49 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.001G266000 [exp] 119 / 4e-31 AT5G12840 103 / 1e-25 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.009G060600 [exp] 117 / 3e-30 AT5G12840 114 / 9e-30 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.006G053500 [exp] 117 / 4e-30 AT1G30500 123 / 3e-34 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.018G064700 [exp] 108 / 1e-26 AT1G72830 172 / 5e-51 "nuclear factor Y, subunit A3", nuclear factor Y, subunit A3 (.1.2.3) Potri.011G098400 [exp] 103 / 5e-26 AT1G30500 171 / 4e-54 "nuclear factor Y, subunit A7", nuclear factor Y, subunit A7 (.1.2) Potri.009G052900 [exp] 106 / 6e-26 AT5G12840 203 / 1e-63 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4) Potri.001G257600 [exp] 103 / 7e-25 AT5G12840 216 / 1e-68 "nuclear factor Y, subunit A1", EMBRYO DEFECTIVE 2220, nuclear factor Y, subunit A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02045 [flax] [poplar] CBFB_NFYA CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Representative CDS sequence Show only first row Show all	>Lus10013592 pacid=23168721 polypeptide=Lus10013592 locus=Lus10013592.g ID=Lus10013592.BGIv1.0 annot-version=v1.0 ATGACTATGAAGACACTCTACTTCAAAGAACATGAAGGGATTGCTCAGAACCCTGCTGGGCAGCTATCTTCTTCTTCTACTCCAACAACAGTGCCCTGGT GGAATGTGATGGGATCTCAACCTGCTTACGTGGATTCCCAATTGAAGGCTTTCTCTATTGAGGGTGGAGACCAGGTCACTGCCACTAAGCAGACTTCCCC AACCATTGATCAAGGACGAGATGGTCTGGGGAAGGAGGCTCCCACTGAGTTTAATATCTTCCCAGCCTCTTCAGGAAATGGCAAATCCATCAGTGAGGGG CAAAAGGCTGTGCCAGCCCAGTCATTTTTCCCTCTGCAAGCAACCATGGCTGCTCCGTATGACTTGGGATTTGGTCAGCAAATGGTCTGTGCAAAATATC CTCCTATGGATCAATATTATGGCATTTTCTCAGCTTATGGACCTCAAATTCCGGGTAGGATCATGCTGCCAATGGACATGAGCACAGATGAGGGACCTAT TTATGTGAATGCTAAGCAATATCATGGAATCCTCAGGCGTCGTAAGTCTCGTGCAAAAGCGGAAATGGAGAACAAACTAAGCAGAACTCGCAAGCAATAC ATGCACCATTCGCGCCATCTCCATGCAATGCGTAGACCAAGGGGAAGCGGCGGCCGTTTCTTGACCAAAATGGAGATCGACAAAATGACAAGAGAAGGAC ACAACTTTCACCTATCTCAGCCCACAGGCTCCCAGAGTTCTGGAGGAGGAGGCCTGCTGCAGTCTGATAGTGGAGGCTCTGCAAACTCCTCAAAGGAAGC AAATGGTTATGGGGGTGGCAGGATGAATCATAATCATAATCATCATCATCATCATAATCGTTCGGGGTCCGAAGTAACCAGCCTCTTCTCCAGAGATGAA GAAGACATGGGTGGTTGCTTCCAGATCAAGAATCTGATGCCACCTTTCCACTCCTTCCCAGGCATGATGAATACTGGACATGACATTGTCATGCCCAACA GTAAGTGGGTTGCTGCTGCAGTGGATAACTGCAGCAGCAACCTCAAAGTCTGA
AA sequence Show only first row Show all	>Lus10013592 pacid=23168721 polypeptide=Lus10013592 locus=Lus10013592.g ID=Lus10013592.BGIv1.0 annot-version=v1.0 MTMKTLYFKEHEGIAQNPAGQLSSSSTPTTVPWWNVMGSQPAYVDSQLKAFSIEGGDQVTATKQTSPTIDQGRDGLGKEAPTEFNIFPASSGNGKSISEG QKAVPAQSFFPLQATMAAPYDLGFGQQMVCAKYPPMDQYYGIFSAYGPQIPGRIMLPMDMSTDEGPIYVNAKQYHGILRRRKSRAKAEMENKLSRTRKQY MHHSRHLHAMRRPRGSGGRFLTKMEIDKMTREGHNFHLSQPTGSQSSGGGGLLQSDSGGSANSSKEANGYGGGRMNHNHNHHHHHNRSGSEVTSLFSRDE EDMGGCFQIKNLMPPFHSFPGMMNTGHDIVMPNSKWVAAAVDNCSSNLKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	0	1
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10017824 [exp]	2.6	0.8549
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	4.0	0.8548
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10021259 [exp]	4.6	0.8548
AT5G04460			RING/U-box superfamily protein...		Lus10017455 [exp]	6.0	0.8256
AT3G24315		ATSEC20	Sec20 family protein (.1)		Lus10014460 [exp]	7.2	0.8412
AT1G17970			RING/U-box superfamily protein...		Lus10021722 [exp]	8.2	0.7751
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	9.2	0.8386
AT5G12840	CCAAT	NF-YA1, ATHAP2A...	"nuclear factor Y, subunit A1"...		Lus10016411 [exp]	10.6	0.8325
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	11.8	0.7812
AT1G62990	HD	IXR11, KNAT7	KNOTTED-like homeobox of Arabi...		Lus10024485 [exp]	13.0	0.8135

Compare expression of checked genes

Lus10013592 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.