Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 77 / 3e-18 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 76 / 4e-18 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 69 / 3e-15 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 68 / 3e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 69 / 4e-15 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 67 / 9e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 66 / 2e-14 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 65 / 9e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 63 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 60 / 6e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013595 [exp] 130 / 4e-39 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 126 / 3e-37 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021258 [exp] 123 / 5e-36 AT2G47140 177 / 2e-54 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 110 / 4e-31 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 109 / 7e-31 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 107 / 6e-30 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10029370 [exp] 103 / 2e-28 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 102 / 6e-28 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 101 / 1e-27 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206800 [exp] 106 / 9e-30 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 96 / 9e-26 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 95 / 3e-25 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 95 / 3e-25 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 89 / 7e-23 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 89 / 9e-23 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 89 / 9e-23 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 87 / 4e-22 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 87 / 5e-22 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 86 / 7e-22 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013593 pacid=23168715 polypeptide=Lus10013593 locus=Lus10013593.g ID=Lus10013593.BGIv1.0 annot-version=v1.0 ATGAAGAATTTGAGCGTGGAGCTTGGACAGTACGGGATAAGGGTCAACGCCGTGTCGCCTTGCGGGGTGGCAACGCCGTTCTCCGTGGAGGCCTCCGGGA TAACGGATCTAGAGCTGATTGAGCATATTGTTTCGGAGAGGGTTGGGCTGAATGGAGCGGTTTTGAAGGTTGATGACGTGGCGGAGGCGGCGCTGTACCT TGTCAGTGATGAGTCCAAGTTTATCAGCGGGTTGAACGTCTTGATCGACGGCGGCCATAACTTGAAGAGTGCTTAA
AA sequence Show only first row Show all	>Lus10013593 pacid=23168715 polypeptide=Lus10013593 locus=Lus10013593.g ID=Lus10013593.BGIv1.0 annot-version=v1.0 MKNLSVELGQYGIRVNAVSPCGVATPFSVEASGITDLELIEHIVSERVGLNGAVLKVDDVAEAALYLVSDESKFISGLNVLIDGGHNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	0	1
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	1.4	0.9920
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021258 [exp]	2.4	0.9876
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	3.2	0.9887
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	4.5	0.9857
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10007972 [exp]	4.5	0.9850
AT4G23690			Disease resistance-responsive ...		Lus10032331 [exp]	5.1	0.9804
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	5.7	0.9831
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	5.9	0.9848
AT1G47530			MATE efflux family protein (.1...		Lus10042344 [exp]	6.7	0.9802
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10042118 [exp]	7.3	0.9821

Compare expression of checked genes

Lus10013593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.