Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11780 178 / 2e-58 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) AT5G06480 163 / 2e-52 Immunoglobulin E-set superfamily protein (.1) AT3G44100 135 / 2e-41 MD-2-related lipid recognition domain-containing protein (.1) AT2G16005 54 / 1e-09 MD-2-related lipid recognition domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021256 [exp] 258 / 1e-89 AT3G11780 183 / 4e-60 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Lus10013366 [exp] 148 / 2e-46 AT3G11780 161 / 1e-51 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201400 [exp] 162 / 5e-52 AT3G11780 170 / 6e-55 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2) Potri.016G067800 [exp] 157 / 4e-50 AT3G11780 156 / 1e-49 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0532 [flax] [poplar] LIG PF02221 [flax] [poplar] E1_DerP2_DerF2 ML domain
Representative CDS sequence Show only first row Show all	>Lus10013596 pacid=23168752 polypeptide=Lus10013596 locus=Lus10013596.g ID=Lus10013596.BGIv1.0 annot-version=v1.0 ATGATTCCGTGCAAGCTGATTGTTCCCTTCACGTTGTTGCTCTGTCTGCTGGTGCCATTGATCCAGGCTACGGATTTCCGGTACTGCGATAAGAAGAGTG ATCGTGGCGATGTTAAGGTGAATGGAGTAGAGATTACGCCGAACCCGATCACAAGAGGCAAGCCGGCGAACTTCACGATCAAAGCTACTGCAGACAAGGG ATTTTCTGGAGGCAAACTCGTGATTGATGTCTCATACTTTATAATTCACGTTTATTCTGAGACTAAGAACTTGTGTGATGAGACATCCTGCCCTGTATCT AGCGGTGATTTTGTGGTTTCTCATTCAGAGATTCTTCCGGGAGTCACTCCACCTGGTTCATACACCATCCAAATGAAGATGAGTGATGCAAAGAACAAAG AGTTAACCTGCATTGCCTTCGGCTTCAGCATCGGGTTTGGATCGTCTGTTGCAGATATGTAA
AA sequence Show only first row Show all	>Lus10013596 pacid=23168752 polypeptide=Lus10013596 locus=Lus10013596.g ID=Lus10013596.BGIv1.0 annot-version=v1.0 MIPCKLIVPFTLLLCLLVPLIQATDFRYCDKKSDRGDVKVNGVEITPNPITRGKPANFTIKATADKGFSGGKLVIDVSYFIIHVYSETKNLCDETSCPVS SGDFVVSHSEILPGVTPPGSYTIQMKMSDAKNKELTCIAFGFSIGFGSSVADM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11780			MD-2-related lipid recognition...		Lus10013596 [exp]	0	1
AT1G34060			Pyridoxal phosphate (PLP)-depe...		Lus10007085 [exp]	3.9	0.8946
AT5G59050			unknown protein		Lus10001626 [exp]	5.1	0.8583
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040380 [exp]	7.3	0.8557
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	9.5	0.8187
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10005860 [exp]	11.0	0.8308
AT1G62810			Copper amine oxidase family pr...		Lus10024568 [exp]	13.4	0.7778
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10008714 [exp]	15.0	0.7724
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	16.3	0.7979
AT2G42750			DNAJ heat shock N-terminal dom...		Lus10020749 [exp]	16.9	0.7751
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	16.9	0.8102

Compare expression of checked genes

Lus10013596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.