Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06470 179 / 1e-56 Glutaredoxin family protein (.1) AT3G11773 159 / 6e-50 Thioredoxin superfamily protein (.1.2) AT5G01420 162 / 6e-48 Glutaredoxin family protein (.1) AT4G10630 156 / 2e-46 Glutaredoxin family protein (.1) AT1G64500 144 / 2e-41 Glutaredoxin family protein (.1) AT5G03870 142 / 1e-40 Glutaredoxin family protein (.1) AT5G58530 139 / 1e-40 Glutaredoxin family protein (.1) AT5G13810 139 / 2e-40 Glutaredoxin family protein (.1) AT1G32760 136 / 5e-39 Glutaredoxin family protein (.1) AT3G57070 136 / 4e-38 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021255 [exp] 403 / 4e-145 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10028742 [exp] 187 / 3e-58 AT5G01420 221 / 6e-69 Glutaredoxin family protein (.1) Lus10017547 [exp] 179 / 3e-55 AT5G01420 227 / 2e-71 Glutaredoxin family protein (.1) Lus10008270 [exp] 160 / 4e-48 AT4G10630 305 / 7e-103 Glutaredoxin family protein (.1) Lus10033238 [exp] 157 / 9e-47 AT4G10630 297 / 1e-99 Glutaredoxin family protein (.1) Lus10017029 [exp] 151 / 1e-43 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10021353 [exp] 150 / 4e-43 AT5G03870 296 / 3e-97 Glutaredoxin family protein (.1) Lus10039537 [exp] 140 / 8e-41 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 139 / 2e-40 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067700 [exp] 228 / 7e-75 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 217 / 1e-70 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.010G243700 [exp] 203 / 3e-64 AT5G01420 213 / 3e-65 Glutaredoxin family protein (.1) Potri.008G016100 [exp] 194 / 1e-60 AT5G01420 209 / 2e-63 Glutaredoxin family protein (.1) Potri.006G212700 [exp] 162 / 5e-48 AT5G03870 332 / 2e-111 Glutaredoxin family protein (.1) Potri.016G079400 [exp] 158 / 2e-46 AT5G03870 301 / 2e-99 Glutaredoxin family protein (.1) Potri.001G448300 [exp] 150 / 3e-44 AT4G10630 285 / 6e-95 Glutaredoxin family protein (.1) Potri.003G141800 [exp] 147 / 9e-43 AT1G64500 315 / 8e-106 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 144 / 3e-41 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 140 / 4e-41 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10013597 pacid=23168773 polypeptide=Lus10013597 locus=Lus10013597.g ID=Lus10013597.BGIv1.0 annot-version=v1.0 ATGAAGAGCTCAGTCAGAACAGAAAGATTCTACCACAAACTCAACTTCATCACCACCCCCCTCAAACAACAACCCCCTACTTGCCATGTCATCAAGAAAA CCAATCATGATGATGAGGTGGACACCAGTCACATCACGCGGCTTTCGGTCTACCAGCTGAGCTGTCCACCAGGCGGATCCAACACCGTGATCCTCTATAC CACAAGCCTAAGGAGCATACGGAAGACGTTCGAGGAATGCCACTCGATCCGGTTCTTACTCCAGAGCTTCAAGGTGTCCTTCCAAGAGCGAGACGTGTCG ATGGACTTGGGGTTCAGGGATGAGCTTTGGAAGGTGTTGGGAGACGGAGGGAGGGTGATCCCTCCTCGGCTTTTCATAAAGGGGAGGTACATTGGTGGAG CTGATGAAGTGGTCACTCTGCATGAACAGGGGAAGCTTAGGAAGCTTCTTGAAGGAATCCCCATGGTTGCTAACTGGTCAAGTGCCAACTGTGCTTGCTT GGGGTGCGGCAACTTGAGGTTCGTTGTTTGCTGTAATTGTAATGGAAGGAGGAAGGTTGTTAGTGAAGGAGGAATTGGGTTCGTAAGGTGCTTGGATTGT AATGAGAACGGACTCATGAAATGCTCTGTTTGTAGCTGA
AA sequence Show only first row Show all	>Lus10013597 pacid=23168773 polypeptide=Lus10013597 locus=Lus10013597.g ID=Lus10013597.BGIv1.0 annot-version=v1.0 MKSSVRTERFYHKLNFITTPLKQQPPTCHVIKKTNHDDEVDTSHITRLSVYQLSCPPGGSNTVILYTTSLRSIRKTFEECHSIRFLLQSFKVSFQERDVS MDLGFRDELWKVLGDGGRVIPPRLFIKGRYIGGADEVVTLHEQGKLRKLLEGIPMVANWSSANCACLGCGNLRFVVCCNCNGRRKVVSEGGIGFVRCLDC NENGLMKCSVCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06470			Glutaredoxin family protein (....		Lus10013597 [exp]	0	1
AT3G50120			Plant protein of unknown funct...		Lus10009871 [exp]	1.4	0.8827
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10015907 [exp]	2.8	0.8679
AT1G69330			RING/U-box superfamily protein...		Lus10004666 [exp]	6.5	0.8298
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	6.9	0.8556
AT1G67050			unknown protein		Lus10009160 [exp]	7.1	0.8348
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	8.9	0.8020
AT3G25130			unknown protein		Lus10022768 [exp]	10.6	0.8250
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	12.6	0.7976
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	13.3	0.8528
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Lus10023561 [exp]	14.0	0.8096

Compare expression of checked genes

Lus10013597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.