Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11760 710 / 0 unknown protein AT5G04860 544 / 0 unknown protein AT2G10560 234 / 2e-71 unknown protein AT2G25460 131 / 1e-32 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021254 [exp] 1273 / 0 AT3G11760 793 / 0.0 unknown protein Lus10016183 [exp] 882 / 0 AT3G11760 771 / 0.0 unknown protein Lus10029364 [exp] 838 / 0 AT3G11760 733 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201200 [exp] 930 / 0 AT3G11760 818 / 0.0 unknown protein Potri.016G067600 [exp] 909 / 0 AT3G11760 803 / 0.0 unknown protein Potri.008G015700 [exp] 681 / 0 AT3G11760 665 / 0.0 unknown protein Potri.010G244100 [exp] 677 / 0 AT3G11760 657 / 0.0 unknown protein Potri.018G027200 [exp] 306 / 1e-94 AT3G11760 327 / 5e-103 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10013598 pacid=23168718 polypeptide=Lus10013598 locus=Lus10013598.g ID=Lus10013598.BGIv1.0 annot-version=v1.0 ATGGTGGTCAAGATGATGCGGTGGCCATGGCCGCCTTCACTTTCGAAGAAGTACGATGTGACGCTGGTGGTTAAGAGGATGGAAGGTTGGGATCTAACTG CCAGTGGAGAAAAAGCTGATAGATTGGCAGTTGAGATTCGATGGAAGGGTCCCAAAATGGGGCTGGGATCGTTCAGGCGGAGGGTTAAGAGGAATTTCAC CAAAGAGGTCAAAGTGCCGGCGGCGACGGCGGCTGTTGATGGCTCTCCATCCTCCGACGGGGAAATCAGCAACGGCTGTCCGGCGGTGGTGGAGTGGGAT GAGGTGTTTCAGAACGTTTGTGCTCTGTCGCCTTACAAAGAGAATGTCTTTCAGCCGTGGGAGATCGTTTTCACCGTTTTCAATGGAGTCAACCAAGTTC CAAAGAAGAAAGTGCCTTGTATTGGAACAGCGTTGCTAAACCTTGCTGAATTTGCTGCTAAAGCTGACGAGAAAGAGTTTGAACTGAGCCTCCCTCTTCT CCGACCCTCTGGTTCTACTGATCCCCAGACCTTGCTTTCGGTATGTTCCTTTTCCAACTGTTGTCAGCAAAAACTTAAGGACGAGGTCTCAGCGATTAAA GCTGGTCTCAGAAAAGTAAAGATCTTCAAGGACTATGTATCCACCAGGAGGGCCAAGAAAGCCTGCCACGAGGAAGAAGAGAGTGAAGGAAAGTCTTCTT CGAGGAGTGAAGATGGAGAGTACAATTATCCATTTGACTCGGATTCCCTTGATGATTTTGAGGAAGGAGAATCAGATGAAATAAAGGAGGACGCTAATGT TAGGAAATCATTCAGTTATGGTACATTAGCTTATGCAAACGGCATTGGAGAATCAGCGTACTATAATGTTGGACGAAGTGACGGAAATGAGGATTGGGTT TACTACAGCAACCGGATATCTGATGTGGGCAGCTCGCAGACTAGTGAGATTGATCAATCCATCTCTGAGCCACCTTTAGTGCAGAGTTCAAAACGAATTA TGCTGCCTTGGAGGAAAAGGAAGATGAGCTTTAGGTCGCCTAAAGCCAAAGGAGAGCCATTGCTGAAGAAAGCTTATGGAGAAGAGGGGGGCGATGACAT TGATTTTGACCGTAGGCAGCTTAGTTCTGATGAAGCGCTTGCTCTCGTGTTGCGTAAGGCGGAGGAGGAATCTTCTGTAAACCGCTCATCAGTTTCTGAT TTTGGAGATGATAACTTTGCTGTGGGGAGTTGGGACCGCAAAGAAATTAACAGCCGGGATGGGCAGTTGAAGCTTCAAACCGAGGTCTTTTTTGCTTCTA TCGATCAACGAAGTGAGCGTGCAGCTGGGGAGAGTGCTTGCACAGCTCTCGTGGCTGTGATCGCCGACTGGTTCCAGAACAACCATGATTTGATGCCTTT AAAGTCCCAATTTGATAGCCTAATTAGGGATGGGTCCCTAGAATGGAGGAACCTCTGCGAGAACGAGACCTACAGAGAGCGGTTTCCTGACAGGCACTTC GACCTCGAAACGGTCCTCCAAGCTAAAATCCGACCACTTTCGGTGGTTCCTAGCAGGTCGTTTGTCGGGTTTTTCCATCCAGAAGGGATGGACGAGGCAA GATTTGACTTCTTACATGGCGCCATGTCTTTTGATAACATTTGGGATGAGATCAATGCTGCTGAATGTCCAAGCAATGGTGAGCCTCGGCTATACATTAT CAGCTGGAATGACCATTTTTTCATCCTCAAAGTAGAACCAGAAGCATACTATATTATCGACACCTTGGGTGAGAGGCTCTTTGAAGGATGCAATCAGGCT TACATTCTGAAATTTGACAGCAGCACTGCCATACGCAGAATGCCAGATGTTGCTCAATCATCTGACGAGAAGAAATCAAGTAATACCGAACATCAGACTC TTGCAGCTGTAATCGAGCCGAAGGATGAAGAAGCTTCTGTGTCTCGAGCAACGGTTACAAAGAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGAAGCAGCGGAAGAGGAAATTGTATACCAAGGGAAGGAGTCATGCAAGGAGTACATAAAGAGCTTCATGGCTGCTATACCCATCAGGGAGCTGCAGACA GACATCAAGAAAGGTCTAATGGCATCGACGCCTCTTCATCAACGATTGCAGATCGAGTTCCATTATACACAATGCTTGCGTCCCGTGCTAGAACTGACTA GAGCGGTACATCCGGAATCACCAGCTAACATGGCAATACAAGAGGTTGCTGTTTAG
AA sequence Show only first row Show all	>Lus10013598 pacid=23168718 polypeptide=Lus10013598 locus=Lus10013598.g ID=Lus10013598.BGIv1.0 annot-version=v1.0 MVVKMMRWPWPPSLSKKYDVTLVVKRMEGWDLTASGEKADRLAVEIRWKGPKMGLGSFRRRVKRNFTKEVKVPAATAAVDGSPSSDGEISNGCPAVVEWD EVFQNVCALSPYKENVFQPWEIVFTVFNGVNQVPKKKVPCIGTALLNLAEFAAKADEKEFELSLPLLRPSGSTDPQTLLSVCSFSNCCQQKLKDEVSAIK AGLRKVKIFKDYVSTRRAKKACHEEEESEGKSSSRSEDGEYNYPFDSDSLDDFEEGESDEIKEDANVRKSFSYGTLAYANGIGESAYYNVGRSDGNEDWV YYSNRISDVGSSQTSEIDQSISEPPLVQSSKRIMLPWRKRKMSFRSPKAKGEPLLKKAYGEEGGDDIDFDRRQLSSDEALALVLRKAEEESSVNRSSVSD FGDDNFAVGSWDRKEINSRDGQLKLQTEVFFASIDQRSERAAGESACTALVAVIADWFQNNHDLMPLKSQFDSLIRDGSLEWRNLCENETYRERFPDRHF DLETVLQAKIRPLSVVPSRSFVGFFHPEGMDEARFDFLHGAMSFDNIWDEINAAECPSNGEPRLYIISWNDHFFILKVEPEAYYIIDTLGERLFEGCNQA YILKFDSSTAIRRMPDVAQSSDEKKSSNTEHQTLAAVIEPKDEEASVSRATVTKNEEEEEEEEEEEEEAAEEEIVYQGKESCKEYIKSFMAAIPIRELQT DIKKGLMASTPLHQRLQIEFHYTQCLRPVLELTRAVHPESPANMAIQEVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11760			unknown protein		Lus10013598 [exp]	0	1
AT3G09830			Protein kinase superfamily pro...		Lus10037980 [exp]	4.2	0.8265
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	4.9	0.8796
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	5.2	0.8724
AT1G66420	GeBP		DNA-binding storekeeper protei...		Lus10017793 [exp]	7.4	0.8655
AT3G11760			unknown protein		Lus10021254 [exp]	7.5	0.8772
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	8.0	0.8696
AT4G32480			Protein of unknown function (D...		Lus10018603 [exp]	9.5	0.7924
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	11.0	0.8427
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	13.3	0.8555
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	13.5	0.8376

Compare expression of checked genes

Lus10013598 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.