Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22030 792 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT1G32850 606 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT4G10570 595 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 594 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT2G40930 594 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G46740 98 / 9e-21 UBP21 ubiquitin-specific protease 21 (.1) AT2G32780 96 / 1e-19 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G04860 94 / 4e-19 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT5G57990 90 / 4e-18 UBP23 ubiquitin-specific protease 23 (.1) AT4G31670 87 / 2e-17 UBP18 ubiquitin-specific protease 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021253 [exp] 1781 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013369 [exp] 822 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 796 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10027289 [exp] 629 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10033243 [exp] 621 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10017343 [exp] 616 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10038994 [exp] 603 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10001661 [exp] 596 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10008276 [exp] 423 / 1e-133 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G201100 [exp] 1002 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.001G214800 [exp] 854 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G033800 [exp] 645 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 622 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.011G152500 [exp] 610 / 0 AT4G10570 1106 / 0.0 ubiquitin-specific protease 9 (.1) Potri.001G449000 [exp] 610 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.016G067400 [exp] 246 / 7e-73 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.018G009500 [exp] 91 / 2e-18 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.003G092400 [exp] 90 / 4e-18 AT4G17895 358 / 2e-112 ubiquitin-specific protease 20 (.1) Potri.006G270600 [exp] 89 / 4e-18 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00443 [flax] [poplar] UCH Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Lus10013599 pacid=23168729 polypeptide=Lus10013599 locus=Lus10013599.g ID=Lus10013599.BGIv1.0 annot-version=v1.0 ATGACCCGCCGTCTCAACGGTAATCTCAGCCGTCTCTCGATCTTCACCAACTCCGCCGGATTCCTTTCTTTCAAGCTTGCTCGTTTATCCCTCTCGACCT TGCGCTTCTTCAAGGCCTTGCTCTCTCGTTTCCTCTTTCTTAAAACCCTCGTACTCGTCCGCCGTCGTTCCTCTGCTTCCCCTTCCTCATCCATGGACGA CGATTTCCTCTCCTCCGTTGACGGAAACAACTTCCTCGAGCTCGATCTCGACAACGTTTACAACTCGGCCTCTTCGTCCTCCGATAATCACCGCAGGATT TCCGTCAATGACGGCGAGGAAGACTTCGGGAATGAGGTCGAGAAGCTCTACTTGGTCCATTTCAGATGGTGGAGTGAGGTGCAACATCGGCCAGATCAAG TCGGAGTGTTGTATAATGTTGATTCGAGCTATGATGATGCGGCGATTCAACTATACTTGAACAGAGAAGATAAGTTGGGGGACAATGATGATGTGGAGGA AGGGTTTTCAGGCAGGGAGTATGCTTTGCTCTCCGAAACAATGTGGTTGCAATCATTGAAGTGGCATAACGATTCTAAAGGGATATTGAAGGCCGTTAAT CGCCCTTATGTTGCTGAAGACAACTATGAAGATATCTTTTCCTTACAAGTCAGGCTTTCTGTTTCTTGGGAAACAAACTCTTTGCTTGCAAAGATCAATT TTAAGGACAATTTGGCCGCTTCATACAGGAGAGCATGTACTATTTTTTCTCCCAAGTCCAAGCAGTTGCACATTTGGGATTTCTCTGGCCAGACAACTCA ATTATTTCTGCGCAGTCAGAATACGGTGTCTAATGGTCCGCTGTGGCAACCACTAGAAGAGATAAAACTAGAACTGCAAGTCCATGGATTCACAGAATAT ATTGAGGACCACGATGGGAATATAGATAAGGAGGACAACAGTTCAACATCTTTATTCAGTGGTGGGTCAGTGAAAATGAATGGAACTAGTGATTGGACGA CATTTTATTCAAGCGGCACAAACTCCTCGTCTTCTTTTACTGGTCATAGGGAGGTCGGTTCTCTGGGTTTGAAAGGACTTCAGAATCTTGGAAATACTTG TTTCATGAACAGTGCTATGCAGTGTTTAGCACACACTCCAAAGCTAGTTGACTATTTCCTTGGTGACTACAAGAAAGAGATAAACCGTGAAAATCCCCTA GGAATGAGAGGCGAGCTTGCATCGGCATTTGGAGACTTGTTAAGAAATTTATGGTCTCCAGGATCAGCTGCAGTAGCTCCAAGATTATTCAAGTTGAGAC TTGCTACTTTTGCTCCCCAATTTAGTGGCTACAATCAACATGATTCTCAAGAATTTCTTGCATTTTTGCTGGATGGGCTGCATGAGGATTTGAATCGGGT GAAGAAAAAGCCATACATTGAGGTTAAAGATGCAGAGGATCGTCCAGATGCTGAGGTTGCAGCAGAATACTGGTGGAGTCATATGGCTAGAAATAACTCT ATTGTAGTTGATCTATTCCAAGGCCAGTACCGATCAATGTTGGTTTGCCCTTTTTGCCAAAAATCATCCATCACGTTTGATCCATTTATGTATCTGTCGC TGCCGTTGCCTTCAACTACAATGCGCACAATGACACTAACAGTCTTGGGCGCGGATGGTTCTTGCATGCCATCTCCCGTCACAGTTACCGTCCCAAATGG TGGGCAGTTAAAGGATCTCACGGATGCACTGAGCAGAGCATGTTCCTTAAGAAGTGATGAAACTTTGCTACTGGCTGAGATATATAGGAATAAAGTTTTC AGCTTCTTTGACGGTCCAACCGGTTCACTAGCCTTGATCAGAGATGATGATACACTTGTTGCTTATCGGTTACCTAAAGAAAGTGAAGCATCCCCCTTGG TTGTGTTTACGCATAAACGTGCAGAAAAATTCCGTTATTCGACGACGCCATCAATTGAGACGTTTGGCATTCCATTTGTAACCAGCTTATCTGCTATCTC AAAGGGGCTCGATCTTTGCAAACAGTTCTTGAAACTTCTCAATCCGTTTCTGAAGCAAGTTGATGAAGTTTCAGAAGTTGAAGATGCAAGGATAATCTCT GTTGAAGATTCTGGGATGGAAGATGCCAGCAGCCCTGCAAAATCTTGTAGCGACTCAGACACTGTATCTGATACTGAAGATAGTGAGCATATCACGCCTG GCTTTAAATTCTGCCACGAAGATGATTTGTCCAATGAGATAACGATGGAGGATCCATTATTGATTTCTGAGTTAACAGATAGGTTTCATGTATCTGTTTT CTGGTCGGCAAGCATGGTGTCAATGTACGATACATCTCTCCTCAACTCATTGCAAAAAGTGTCTAATTTGGAGTTACCTATGAAGAGATTAAAGGAGTCC ATTTCCTTATACAAATGCCTTGAATCCTTCTTGAAGGAAGAGCCTTTAGGACCAGAAGACATGTGGTACTGTCCCAGCTGCAAGAAGCCTCGTCAAGCAA CTAAAAAGCTGGATCTTTGGAGACTGCCTGAAATATTAGTCATTCATTTAAAGAGGTTCTCGTACAATCAATATTTCAAGAACAAGTTGGAAACATATGT GGACTTCCCCATTGATGATCTTGATCTCTCAAATTATATATCCTACAATGATGGCAATTACTCCAGTGGTTACACCTTATATGCAATAAGTAACCATTAT GGAGGCATGGGAGGTGGTCATTATACGGCTTTTGTTGATCACGGACATGATATGTGGTACGAGTTTGATGATGAACGAGTTTTCCCGGTCAGTAAGGAGA GTATTAAATCTTCTGCTGCTTATGTTCTTTTCTACCGGAGAGTGTGA
AA sequence Show only first row Show all	>Lus10013599 pacid=23168729 polypeptide=Lus10013599 locus=Lus10013599.g ID=Lus10013599.BGIv1.0 annot-version=v1.0 MTRRLNGNLSRLSIFTNSAGFLSFKLARLSLSTLRFFKALLSRFLFLKTLVLVRRRSSASPSSSMDDDFLSSVDGNNFLELDLDNVYNSASSSSDNHRRI SVNDGEEDFGNEVEKLYLVHFRWWSEVQHRPDQVGVLYNVDSSYDDAAIQLYLNREDKLGDNDDVEEGFSGREYALLSETMWLQSLKWHNDSKGILKAVN RPYVAEDNYEDIFSLQVRLSVSWETNSLLAKINFKDNLAASYRRACTIFSPKSKQLHIWDFSGQTTQLFLRSQNTVSNGPLWQPLEEIKLELQVHGFTEY IEDHDGNIDKEDNSSTSLFSGGSVKMNGTSDWTTFYSSGTNSSSSFTGHREVGSLGLKGLQNLGNTCFMNSAMQCLAHTPKLVDYFLGDYKKEINRENPL GMRGELASAFGDLLRNLWSPGSAAVAPRLFKLRLATFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKKKPYIEVKDAEDRPDAEVAAEYWWSHMARNNS IVVDLFQGQYRSMLVCPFCQKSSITFDPFMYLSLPLPSTTMRTMTLTVLGADGSCMPSPVTVTVPNGGQLKDLTDALSRACSLRSDETLLLAEIYRNKVF SFFDGPTGSLALIRDDDTLVAYRLPKESEASPLVVFTHKRAEKFRYSTTPSIETFGIPFVTSLSAISKGLDLCKQFLKLLNPFLKQVDEVSEVEDARIIS VEDSGMEDASSPAKSCSDSDTVSDTEDSEHITPGFKFCHEDDLSNEITMEDPLLISELTDRFHVSVFWSASMVSMYDTSLLNSLQKVSNLELPMKRLKES ISLYKCLESFLKEEPLGPEDMWYCPSCKKPRQATKKLDLWRLPEILVIHLKRFSYNQYFKNKLETYVDFPIDDLDLSNYISYNDGNYSSGYTLYAISNHY GGMGGGHYTAFVDHGHDMWYEFDDERVFPVSKESIKSSAAYVLFYRRV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	0	1
AT4G10930			unknown protein		Lus10032402 [exp]	2.0	0.8864
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	2.0	0.8953
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	2.8	0.8730
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	3.0	0.8733
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	3.5	0.8671
AT1G27180			disease resistance protein (TI...		Lus10018658 [exp]	4.5	0.8202
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	4.5	0.8721
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	6.6	0.8469
AT4G38440		IYO	MINIYO, unknown protein		Lus10023985 [exp]	6.9	0.8369
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	7.5	0.8533

Compare expression of checked genes

Lus10013599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.