Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62980 157 / 1e-50 FOLB2 Dihydroneopterin aldolase (.1) AT3G11750 157 / 2e-50 FOLB1 Dihydroneopterin aldolase (.1) AT3G21730 134 / 5e-41 FOLB3 Dihydroneopterin aldolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021252 [exp] 267 / 7e-94 AT5G62980 161 / 3e-52 Dihydroneopterin aldolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G067200 [exp] 213 / 1e-72 AT3G11750 166 / 1e-53 Dihydroneopterin aldolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0334 [flax] [poplar] THBO-biosyn PF02152 [flax] [poplar] FolB Dihydroneopterin aldolase
Representative CDS sequence Show only first row Show all	>Lus10013600 pacid=23168741 polypeptide=Lus10013600 locus=Lus10013600.g ID=Lus10013600.BGIv1.0 annot-version=v1.0 ATGGAAGATCAAGAAGTAATCACTGGAGGAGATAAGCTTATACTAAGAGGGTTGAAGTTTCATGGTTTCCACGGAGTAAAACCGGAGGAAAGGTCGTTGG GGCAGAAGTTTGTGATAGATGTAGATGCCTGGATGGATCTCCGACCAGCTGGCTTTTCTGATCAATTGGTAGACACCATTAGCTACACTGACATCTACCG CATAGTTAAGGAAGTTGTGGAAGGGAAGCCACAGAACCTGCTGGAGACAGTGGCTCAAACTATTGCCATGACCACCTTGACGAAGCACGCTCGTATATCT GCTGTGCGAGTGAAAGTTGAGAAGCCTCATGTTGCTGTTCATGGACCTATCGACTATCTCGGGGTTGAGATTCTCAGGCGTCGAGTTGTTGATCTGCCCA AGTGA
AA sequence Show only first row Show all	>Lus10013600 pacid=23168741 polypeptide=Lus10013600 locus=Lus10013600.g ID=Lus10013600.BGIv1.0 annot-version=v1.0 MEDQEVITGGDKLILRGLKFHGFHGVKPEERSLGQKFVIDVDAWMDLRPAGFSDQLVDTISYTDIYRIVKEVVEGKPQNLLETVAQTIAMTTLTKHARIS AVRVKVEKPHVAVHGPIDYLGVEILRRRVVDLPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Lus10013600 [exp]	0	1
AT3G25210			Tetratricopeptide repeat (TPR)...		Lus10038215 [exp]	1.7	0.8987
AT2G41950			unknown protein		Lus10016243 [exp]	2.8	0.8726
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	10.4	0.8571
AT5G50090			unknown protein		Lus10004229 [exp]	12.1	0.8475
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	12.2	0.8105
AT5G66530			Galactose mutarotase-like supe...		Lus10041758 [exp]	12.3	0.7891
AT4G23330			unknown protein		Lus10024630 [exp]	14.8	0.7530
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10008095 [exp]	15.7	0.8306
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10025907 [exp]	16.0	0.8026
AT3G11500			Small nuclear ribonucleoprotei...		Lus10017019 [exp]	16.3	0.8493

Compare expression of checked genes

Lus10013600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.